Solyc01g005870 expression

Experiment: Transcriptome profiling of pennellii ILs
sample IDgenotype descriptionRPM
S0001M82fruit, red ripe, M820
S00021-1fruit, red ripe, S. pennellii IL1-10
S00031-1-2fruit, red ripe, S. pennellii IL1-1-20
S00041-1-3fruit, red ripe, S. pennellii IL1-1-30
S00051-2fruit, red ripe, S. pennellii IL1-20
S00061-3fruit, red ripe, S. pennellii IL1-30
S00071-4fruit, red ripe, S. pennellii IL1-40
S00081-4-18fruit, red ripe, S. pennellii IL1-4-180
S00092-1fruit, red ripe, S. pennellii IL2-10
S00102-1-1fruit, red ripe, S. pennellii IL2-1-10
S00112-2fruit, red ripe, S. pennellii IL2-20
S00122-3fruit, red ripe, S. pennellii IL2-30
S00132-4fruit, red ripe, S. pennellii IL2-40
S00142-5fruit, red ripe, S. pennellii IL2-50
S00152-6fruit, red ripe, S. pennellii IL2-60
S00162-6-5fruit, red ripe, S. pennellii IL2-6-50
S00173-1fruit, red ripe, S. pennellii IL3-10
S00183-2fruit, red ripe, S. pennellii IL3-20
S00203-4fruit, red ripe, S. pennellii IL3-40
S00213-5fruit, red ripe, S. pennellii IL3-50
S00224-1fruit, red ripe, S. pennellii IL4-10
S00234-1-1fruit, red ripe, S. pennellii IL4-1-10
S00244-2fruit, red ripe, S. pennellii IL4-20
S00254-3fruit, red ripe, S. pennellii IL4-30
S00264-3-2fruit, red ripe, S. pennellii IL4-3-20
S00274-4fruit, red ripe, S. pennellii IL4-40
S00285-1fruit, red ripe, S. pennellii IL5-10
S00295-2fruit, red ripe, S. pennellii IL5-20
S00305-3fruit, red ripe, S. pennellii IL5-30
S00315-4fruit, red ripe, S. pennellii IL5-40
S00325-5fruit, red ripe, S. pennellii IL5-50
S00346-2fruit, red ripe, S. pennellii IL6-20
S00356-2-2fruit, red ripe, S. pennellii IL6-2-20
S00366-3fruit, red ripe, S. pennellii IL6-30
S00376-4fruit, red ripe, S. pennellii IL6-40
S00387-1fruit, red ripe, S. pennellii IL7-10
S00397-2fruit, red ripe, S. pennellii IL7-20
S00407-3fruit, red ripe, S. pennellii IL7-30
S00417-4fruit, red ripe, S. pennellii IL7-40
S00427-4-1fruit, red ripe, S. pennellii IL7-4-10
S00437-5fruit, red ripe, S. pennellii IL7-50
S00447-5-5fruit, red ripe, S. pennellii IL7-5-50
S00458-1fruit, red ripe, S. pennellii IL8-10
S00468-1-1fruit, red ripe, S. pennellii IL8-1-10
S00478-1-5fruit, red ripe, S. pennellii IL8-1-50
S00488-2fruit, red ripe, S. pennellii IL8-20
S00498-2-1fruit, red ripe, S. pennellii IL8-2-10
S00508-3fruit, red ripe, S. pennellii IL8-30
S00518-3-1fruit, red ripe, S. pennellii IL8-3-10
S00529-1fruit, red ripe, S. pennellii IL9-10
S00539-1-2fruit, red ripe, S. pennellii IL9-1-20
S00549-1-3fruit, red ripe, S. pennellii IL9-1-30
S00559-2fruit, red ripe, S. pennellii IL9-20
S00569-2-5fruit, red ripe, S. pennellii IL9-2-50
S00579-2-6fruit, red ripe, S. pennellii IL9-2-60
S00589-3fruit, red ripe, S. pennellii IL9-30
S00599-3-1fruit, red ripe, S. pennellii IL9-3-10
S00609-3-2fruit, red ripe, S. pennellii IL9-3-20
S006110-1fruit, red ripe, S. pennellii IL10-10
S006210-1-1fruit, red ripe, S. pennellii IL10-1-10
S006310-2fruit, red ripe, S. pennellii IL10-20
S006410-2-2fruit, red ripe, S. pennellii IL10-2-20
S006510-3fruit, red ripe, S. pennellii IL10-30
S006611-1fruit, red ripe, S. pennellii IL11-10
S006711-2fruit, red ripe, S. pennellii IL11-20
S006811-3fruit, red ripe, S. pennellii IL11-30
S006911-4fruit, red ripe, S. pennellii IL11-40
S007011-4-1fruit, red ripe, S. pennellii IL11-4-10
S007112-1fruit, red ripe, S. pennellii IL12-10
S007212-1-1fruit, red ripe, S. pennellii IL12-1-10
S007312-2fruit, red ripe, S. pennellii IL12-20
S007412-3fruit, red ripe, S. pennellii IL12-30
S007512-3-1fruit, red ripe, S. pennellii IL12-3-10
S007612-4fruit, red ripe, S. pennellii IL12-40
S007712-4-1fruit, red ripe, S. pennellii IL12-4-10

Experiment: Transcriptome analysis of various tissues in tomato cultivar Heinz and the wild relative Solanum pimpinellifolium
sample IDgenotype descriptionRPM
S0584HeinzHeinz unopened flower buds7.48
S0585HeinzHeinz fully opened flowers2.36
S0586HeinzHeinz 1 cm fruits0.05
S0587HeinzHeinz 2 cm fruits0.12
S0588HeinzHeinz 3 cm fruits0.21
S0589HeinzHeinz mature green fruits1.59
S0590HeinzHeinz breaker fruits0.63
S0591HeinzHeinz breaker+10 fruits0.99
S0592HeinzHeinz roots0.28
S0593HeinzHeinz leaves3.04
S0594pimpinellifolium immature green fruits1.54
S0595pimpinellifolium breaker fruits3.11
S0596pimpinellifolium breaker+5 fruits1.06
S0597pimpinellifolium leaves5.71

Experiment: Transcriptome profiling of young flower buds of WT, sun, ovate and fs8.1 NILs in the LA1589 background
sample IDgenotype descriptionRPM
S0929LA1589LA1589 young flower buds at 4 days post-initiation of floral meristem0.02
S0930LA1589LA1589 young flower buds at 6 days post-initiation of floral meristem0.01
S0931LA1589LA1589 young flower buds at 8 days post-initiation of floral meristem0.32
S0932LA1589LA1589 young flower buds at 10 days post-initiation of floral meristem1.36
S0933LA1589LA1589 young flower buds at 13 days post-initiation of floral meristem3.49
S0934LA1589LA1589 young flower buds at 16 days post-initiation of floral meristem4.99
S0935sun NIL in the LA1589 backgroundsun young flower buds at 4 days post-initiation of floral meristem0.06
S0936sun NIL in the LA1589 backgroundsun young flower buds at 6 days post-initiation of floral meristem0.05
S0937sun NIL in the LA1589 backgroundsun young flower buds at 8 days post-initiation of floral meristem0.51
S0938sun NIL in the LA1589 backgroundsun young flower buds at 10 days post-initiation of floral meristem0.9
S0939sun NIL in the LA1589 backgroundsun young flower buds at 13 days post-initiation of floral meristem4.43
S0940sun NIL in the LA1589 backgroundsun young flower buds at 16 days post-initiation of floral meristem5.58
S0941ovate NIL in the LA1589 backgroundovate young flower buds at 4 days post-initiation of floral meristem0.03
S0942ovate NIL in the LA1589 backgroundovate young flower buds at 6 days post-initiation of floral meristem0.09
S0943ovate NIL in the LA1589 backgroundovate young flower buds at 8 days post-initiation of floral meristem0.39
S0944ovate NIL in the LA1589 backgroundovate young flower buds at 10 days post-initiation of floral meristem1.05
S0945ovate NIL in the LA1589 backgroundovate young flower buds at 13 days post-initiation of floral meristem3.23
S0946ovate NIL in the LA1589 backgroundovate young flower buds at 16 days post-initiation of floral meristem4.74
S0947fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 4 days post-initiation of floral meristem0
S0948fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 6 days post-initiation of floral meristem0.02
S0949fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 8 days post-initiation of floral meristem0.19
S0950fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 10 days post-initiation of floral meristem1.02
S0951fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 13 days post-initiation of floral meristem2.41
S0952fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 16 days post-initiation of floral meristem4.86

Experiment: Transcriptome analysis of various tissues in wild species S. pimpinellifolium, LA1589
sample IDgenotype descriptionRPM
S0608LA1589anthesis flowers (0DPA)17.82
S0609LA158910 days post anthesis fruit (10 DPA1)3.1
S0610LA158910 days post anthesis fruit 2 (10 DPA2)1.03
S0611LA158920 days post anthesis fruit (20DPA)1.68
S0612LA1589rippening fruit (33DPA)0.41
S0613LA1589cotyledons (COTYL)8.27
S0614LA1589hypocotyl (HYPO)3.59
S0615LA1589vegitative meristems (MERI)2.75
S0616LA1589mature leaves (ML)29.47
S0617LA1589whole root (ROOT)0.23
S0618LA1589young flower buds (YFB)0.39
S0619LA1589young leaves (YL)3.62

Experiment: Transcriptome sequencing of tomato leaves treated with different bacteria and PAMPs
sample IDgenotype descriptionRPM
S0620Rio Grande prf3 (deletion in Prf)mock PAMPs 30 min36.23
S0621Rio Grande prf3 (deletion in Prf)cold shock protein 22 (csp22) 30 min17.86
S0622Rio Grande prf3 (deletion in Prf)flagellin 22 (flg22) 30 min21.98
S0623Rio Grande prf3 (deletion in Prf)flagellin II-28 (flgII-28) 30 min28.9
S0624Rio Grande prf3 (deletion in Prf)Lipopolysaccharides (LPS) 30 min28.68
S0625Rio Grande prf3 (deletion in Prf)Peptidoglycan (PGN) 30 min22.99
S0626Rio Grande prf3 (deletion in Prf)mock PAMPs 6h10.04
S0627Rio Grande prf3 (deletion in Prf)cold shock protein 22 (csp22) 6 h9.11
S0628Rio Grande prf3 (deletion in Prf)flagellin 22 (flg22) 6h11.28
S0629Rio Grande prf3 (deletion in Prf)flagellin II-28 (flgII-28) 6h19.14
S0630Rio Grande prf3 (deletion in Prf)Lipopolysaccharides (LPS) 6 h8.54
S0631Rio Grande prf3 (deletion in Prf)Peptidoglycan (PGN) 6h 11.59
S0632Rio Grande prf3 (deletion in Prf)mock bacteria 30 min33.31
S0633Rio Grande prf3 (deletion in Prf)DC3000 30 min31.32
S0634Rio Grande prf3 (deletion in Prf)DC3000ΔhrcQ-U 30 min33.05
S0635Rio Grande prf3 (deletion in Prf)DC3000ΔhrcQ-UΔfliC 30 min33.58
S0636Rio Grande prf3 (deletion in Prf)DC3000Δ28 30 min34.18
S0637Rio Grande prf3 (deletion in Prf)DC3000ΔAvrPtoΔAvrPtoB 30 min35.28
S0638Rio Grande prf3 (deletion in Prf)Pseudomonas fluorescens 30 min29.8
S0639Rio Grande prf3 (deletion in Prf)Pseudomonas putida 30 min30.49
S0640Rio Grande prf3 (deletion in Prf)Agrobacterium tumefaciens 30 min33.95
S0641Rio Grande prf3 (deletion in Prf)mock bacteria 6 h10.91
S0642Rio Grande prf3 (deletion in Prf)DC3000 6 h86.03
S0643Rio Grande prf3 (deletion in Prf)DC3000ΔhrcQ-U 6 h67.21
S0644Rio Grande prf3 (deletion in Prf)DC3000ΔhrcQ-UΔfliC 6 h90.38
S0645Rio Grande prf3 (deletion in Prf)DC3000Δ28 6 h10.94
S0646Rio Grande prf3 (deletion in Prf)DC3000ΔAvrPtoΔAvrPtoB 6 h29.05
S0647Rio Grande prf3 (deletion in Prf)Pseudomonas fluorescens 6 h9.02
S0648Rio Grande prf3 (deletion in Prf)Pseudomonas putida 6 h5.74
S0649Rio Grande prf3 (deletion in Prf)Agrobacterium tumefaciens 6 h9.08

Experiment: Transcriptome or gene expression of various fruit tissue in FW3.2 NILs
sample IDgenotype descriptionRPM
S0671Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 5 Days Post Anthesis Pericarp0.18
S0672Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 5 Days Post Anthesis Pericarp0.2
S0673Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 7 Days Post Anthesis Pericarp0.33
S0674Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 7 Days Post Anthesis Pericarp0.21
S0675Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 10 Days Post Anthesis Pericarp0.63
S0676Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 10 Days Post Anthesis Pericarp0.53
S0677Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 5 Days Post Anthesis Seed0.01
S0678Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 5 Days Post Anthesis Seed0.01
S0679Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 7 Days Post Anthesis Seed0.01
S0680Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 7 Days Post Anthesis Seed0.01
S0681Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 10 Days Post Anthesis Seed0.08
S0682Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 10 Days Post Anthesis Seed0.01
S0683Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) young flower bud3.21
S0684Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) young flower bud2.8

Experiment: Tissue-specific transcriptome profiling of Solanum pimpinellifolium ovaries and fruit using LCM-coupled to RNA-seq
sample IDgenotype descriptionRPM
S0685LA1589LA1589, Ovule 0 dpa (SA1_D0_OV)0.02
S0686sunsun, Ovule 0 dpa (SA2_D0_OV)0.08
S0687LA1589LA1589, Placenta 0 dpa (SA1_D0_PL)0
S0688sunsun, Placenta 0 dpa (SA2_D0_PL)0.26
S0689LA1589LA1589, Septum 0 dpa (SA1_D0_SE)0.08
S0690sunsun, Septum 0 dpa (SA2_D0_SE)0.05
S0691LA1589LA1589, Pericarp 0 dpa (SA1_D0_PE)0.04
S0692sunsun, Pericarp 0 dpa (SA2_D0_PE)0.08
S0693LA1589LA1589, Embryo 4 dpa Fruit (SA1_D4_EM)0
S0694sunsun, Embryo 4 dpa Fruit (SA2_D4_EM)0.02
S0695LA1589LA1589, Endosperm 4 dpa Fruit (SA1_D4_ENDO)0
S0696sunsun, Endosperm 4 dpa Fruit (SA2_D4_ENDO)0
S0697LA1589LA1589, Seed Coat 4 dpa Fruit (SA1_D4_SC)0
S0698sunsun, Seed Coat 4 dpa Fruit (SA2_D4_SC)0.01
S0699LA1589LA1589, Funiculus 4 dpa Fruit (SA1_D4_FU)0.06
S0700sunsun, Funiculus 4 dpa Fruit (SA2_D4_FU)0.08
S0701LA1589LA1589, Placenta 4 dpa Fruit (SA1_D4_PL)0.02
S0702sunsun, Placenta 4 dpa Fruit (SA2_D4_PL)0.01
S0703LA1589LA1589, Septum 4 dpa Fruit (SA1_D4_SE)0.04
S0704sunsun, Septum 4 dpa Fruit (SA2_D4_SE)0.01
S0705LA1589LA1589, Pericarp 4 dpa Fruit (SA1_D4_PE)0.01
S0706sunsun, Pericarp 4 dpa Fruit (SA2_D4_PE)0.01

Experiment: Transcriptome sequencing of leaves of resistant (RG-PtoR) and susceptible (RG-prf3 and RG-prf19) tomato plants treated with Pst DC3000
sample IDgenotype descriptionRPM
S0740Rio Grande-PtoRDC3000 4 h35.41
S0741Rio Grande-prf3DC3000 4 h15.7
S0742Rio Grande-prf19DC3000 4 h16.01
S0743Rio Grande-PtoRDC3000 6 h61.29
S0744Rio Grande-prf3DC3000 6 h85.35
S0745Rio Grande-prf19DC3000 6 h85.91

Experiment: Transcriptome sequencing of tomato leaves trated with diferent Pst DC3000 mutant strains
sample IDgenotype descriptionRPM
S0746Rio Grande-PtoRDC3000ΔhopQ1-1 ΔfliC 6 h49.24
S0747Rio Grande-PtoRDC3000ΔhopQ1-1 ΔavrPto ΔavrPtoB 6 h16.42
S0748Rio Grande-PtoRDC3000ΔhopQ1-1 ΔavrPto ΔavrPtoB ΔfliC 6 h43.98

Experiment: Transcriptome profiling of anthesis-stage ovaries from the fs8.1 backcrossed lines in Rio Grande background
sample IDgenotype descriptionRPM
S0749fs8.1, backcrossed line 09S204, BC4F2, Rio Grande background09S204-ee, ovary(anthesis)0.26
S0750WT, backcrossed line 09S204, BC4F2, Rio Grande background09S204-pp, ovary(anthesis)0.38
S0751fs8.1, backcrossed line 09S236, BC3F2, Rio Grande background09S236-ee, ovary(anthesis)0.17
S0752WT, backcrossed line 09S236, BC3F2, Rio Grande background09S236-pp, ovary(anthesis)0.15
S0753fs8.1, backcrossed line 09S237, BC1F4, Rio Grande background09S237-ee, ovary(anthesis)0.13
S0754WT, backcrossed line 09S237, BC1F4, Rio Grande background09S237-pp, ovary(anthesis)0.32

Experiment: Domain-wise effect of AvrPto on the tomato transcriptome 6 hours post inoculation
sample IDgenotype descriptionRPM
S0755Rio Grande-prf3D28E (pCPP45::avrPto) 6 h3.8
S0756Rio Grande-prf3D28E (pCPP45::avrPto I96A) 6 h3.91
S0757Rio Grande-prf3D28E (pCPP45::avrPto 2xA) 6 h3.48
S0758Rio Grande-prf3D28E (pCPP45::avrPto I96A + 2xA) 6 h3.58
S0759Rio Grande-prf3Mock 6 h3.71

Experiment: Transcriptome sequencing of Pti1 silenced plants after treatment of Pst DC3000ΔAvrPtoΔAvrPtoB
sample IDgenotype descriptionRPM
S0658Rio Grande prf3 (deletion in Prf)Azygous of hpPti1 DC3000ΔAvrPtoΔAvrPtoB 3 h10.73
S0659Rio Grande prf3 (deletion in Prf)hpPti1-F10 DC3000ΔAvrPtoΔAvrPtoB 3 h 8.57
S0660Rio Grande prf3 (deletion in Prf)hpPti1-F27 DC3000ΔAvrPtoΔAvrPtoB 3 h20.57
S0661Rio Grande prf3 (deletion in Prf)Azygous of hpPti1 DC3000ΔAvrPtoΔAvrPtoB 6 h14.95
S0662Rio Grande prf3 (deletion in Prf), hairpin Pti1, line F10hpPti1-F10 DC3000ΔAvrPtoΔAvrPtoB 6 h21.81
S0663Rio Grande prf3 (deletion in Prf), hairpin Pti1, line F27hpPti1-F27 ΔAvrPtoΔAvrPtoB 6 h20.87

Experiment: Gene expression in IM/FM, 2 dpi, 4 dpi and 6 dpi floral buds of wild type, lc, fas and lc/fas in the LA1589 background
sample IDgenotype descriptionRPM
S1087LA15892dpi floral buds0
S1088lc2dpi floral buds0
S1089fas2dpi floral buds0.65
S1090lc/fas2dpi floral buds0
S1091LA15894dpi floral buds0.56
S1092lc4dpi floral buds0
S1093fas4dpi floral buds0
S1094lc/fas4dpi floral buds0
S1095LA15896dpi floral buds0
S1096lc6dpi floral buds0.22
S1097fas6dpi floral buds0.41
S1098lc/fas6dpi floral buds0
S1099LA1589floral and inflorescence meristem0.23
S1100lcfloral and inflorescence meristem0
S1101fasfloral and inflorescence meristem0.89
S1102lc/fasfloral and inflorescence meristem0
S1103LA1589sympodial shoot apical meristem0
S1104lcsympodial shoot apical meristem0.33
S1105fassympodial shoot apical meristem0
S1106lc/fassympodial shoot apical meristem0.27

Experiment: RNA-Seq analysis on tomato anthesis flowers of ovate/sov1 NILs in the LA1589 background
sample IDgenotype descriptionRPM
S0764LA1589LA1589, flowers9.32
S0765ovateovate, flowers7.81
S0766sov1sov1, flowers8.64
S0767ovate/sov1ovate/sov1, flowers12.19

Experiment: Transcriptome profiling of three fruit tissues from the fw11.3 NILs in cultivated background
sample IDgenotype descriptionRPM
S0768Rio Grande (fw11.3-D)fw11.3-D Pericarp, 10 Days Post Anthesis0.51
S0769Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 10 Days Post Anthesis0
S0770Rio Grande (fw11.3-D)fw11.3-D Columella, 10 Days Post Anthesis0.03
S0771Rio Grande (fw11.3-D)fw11.3-D Pericarp, 15 Days Post Anthesis0.55
S0772Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 15 Days Post Anthesis0
S0773Rio Grande (fw11.3-D)fw11.3-D Columella, 15 Days Post Anthesis0.03
S0774Rio Grande (fw11.3-D)fw11.3-D Pericarp, 25 Days Post Anthesis0.82
S0775Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 25 Days Post Anthesis0.04
S0776Rio Grande (fw11.3-D)fw11.3-D Columella, 25 Days Post Anthesis0.03
S0777Rio Grande (fw11.3-D)fw11.3-D Pericarp, 33 Days Post Anthesis1.28
S0778Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 33 Days Post Anthesis0
S0779Rio Grande (fw11.3-D)fw11.3-D Columella, 33 Days Post Anthesis0
S0780Rio Grande (fw11.3-D)fw11.3-D Pericarp, 4 Days Post Anthesis0.04
S0781Rio Grande (fw11.3-D)fw11.3-D Septum, Placenta and Columella, 4 Days Post Anthesis0
S0782Rio Grande (fw11.3-D)fw11.3-D Pericarp, 7 Days Post Anthesis0.19
S0783Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 7 Days Post Anthesis0
S0784Rio Grande (fw11.3-D)fw11.3-D Columella, 7 Days Post Anthesis0
S0785Rio Grande (fw11.3-D)fw11.3-D Pericarp, Turning0.13
S0786Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, Turning0.02
S0787Rio Grande (fw11.3-D)fw11.3-D Columella, Turning0.04
S0788Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 10 Days Post Anthesis0.46
S0789Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 10 Days Post Anthesis0.03
S0790Rio Grande (fw11.3-WT)fw11.3-WT Columella, 10 Days Post Anthesis0.01
S0791Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 15 Days Post Anthesis0.78
S0792Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 15 Days Post Anthesis0.02
S0793Rio Grande (fw11.3-WT)fw11.3-WT Columella, 15 Days Post Anthesis0.01
S0794Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 25 Days Post Anthesis0.8
S0795Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 25 Days Post Anthesis0.02
S0796Rio Grande (fw11.3-WT)fw11.3-WT Columella, 25 Days Post Anthesis0.05
S0797Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 33 Days Post Anthesis0.75
S0798Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 33 Days Post Anthesis0
S0799Rio Grande (fw11.3-WT)fw11.3-WT Columella, 33 Days Post Anthesis0
S0800Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 4 Days Post Anthesis0.11
S0801Rio Grande (fw11.3-WT)fw11.3-WT Septum, Placenta and Columella, 4 Days Post Anthesis0
S0802Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 7 Days Post Anthesis0.26
S0803Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 7 Days Post Anthesis0
S0804Rio Grande (fw11.3-WT)fw11.3-WT Columella, 7 Days Post Anthesis0
S0805Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, Turning0.11
S0806Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, Turning0
S0807Rio Grande (fw11.3-WT)fw11.3-WT Columella, Turning0.03

Experiment: Transcriptome profiling of three fruit tissues from the sun NILs in cultivated background
sample IDgenotype descriptionRPM
S0808Sun1642 (sun-WT)SA3 Pericarp and exocarp, 4 Days Post Anthesis0.18
S0809Sun1642 (sun-WT)SA3 Septum and seeds, 4 Days Post Anthesis0.01
S0810Sun1642 (sun-WT)SA3 Pericarp, 7 Days Post Anthesis0.2
S0811Sun1642 (sun-WT)SA3 Septum, 7 Days Post Anthesis0.01
S0812Sun1642 (sun-WT)SA3 Seeds, 7 Days Post Anthesis0
S0813Sun1642 (sun-WT)SA3 Pericarp, 10 Days Post Anthesis0.18
S0814Sun1642 (sun-WT)SA3 Septum, 10 Days Post Anthesis0.02
S0815Sun1642 (sun-WT)SA3 Seeds, 10 Days Post Anthesis0.08
S0816Sun1642 (sun-D)SA4 Pericarp and exocarp, 4 Days Post Anthesis0.04
S0817Sun1642 (sun-D)SA4 Septum and seeds, 4 Days Post Anthesis0
S0818Sun1642 (sun-D)SA4 Pericarp, 7 Days Post Anthesis0.06
S0819Sun1642 (sun-D)SA4 Septum, 7 Days Post Anthesis0.07
S0820Sun1642 (sun-D)SA4 Seeds, 7 Days Post Anthesis0.07
S0821Sun1642 (sun-D)SA4 Pericarp, 10 Days Post Anthesis0.14
S0822Sun1642 (sun-D)SA4 Septum, 10 Days Post Anthesis0.01
S0823Sun1642 (sun-D)SA4 Seeds, 10 Days Post Anthesis0.03

Experiment: Transcriptome profiling of ripe fruits of S. lycopersicoides ILs
sample IDgenotype descriptionRPM
S0824VF36fruit, red ripe, VF360.05
S0825LA3882fruit, red ripe, S. lycopersicoides IL LA38820
S0826LA3886fruit, red ripe, S. lycopersicoides IL LA38860
S0827LA3892fruit, red ripe, S. lycopersicoides IL LA38920
S0828LA4230fruit, red ripe, S. lycopersicoides IL LA42300.05
S0829LA4231fruit, red ripe, S. lycopersicoides IL LA42310
S0830LA4232fruit, red ripe, S. lycopersicoides IL LA42320.17
S0831LA4233fruit, red ripe, S. lycopersicoides IL LA42330.11
S0832LA4234Afruit, red ripe, S. lycopersicoides IL LA4234A0.1
S0833LA4234Bfruit, red ripe, S. lycopersicoides IL LA4234B0.08
S0834LA4235fruit, red ripe, S. lycopersicoides IL LA42350.02
S0835LA4236Afruit, red ripe, S. lycopersicoides IL LA4236A0.04
S0836LA4237fruit, red ripe, S. lycopersicoides IL LA42370
S0837LA4238fruit, red ripe, S. lycopersicoides IL LA42380
S0838LA4239fruit, red ripe, S. lycopersicoides IL LA42390
S0839LA4241Afruit, red ripe, S. lycopersicoides IL LA4241A0.17
S0840LA4241Bfruit, red ripe, S. lycopersicoides IL LA4241B0.06
S0841LA4242Afruit, red ripe, S. lycopersicoides IL LA4242A0.09
S0842LA4242Bfruit, red ripe, S. lycopersicoides IL LA4242B0.09
S0843LA4242Cfruit, red ripe, S. lycopersicoides IL LA4242C0.05
S0844LA4243fruit, red ripe, S. lycopersicoides IL LA42430
S0845LA4244fruit, red ripe, S. lycopersicoides IL LA42440.14
S0846LA4245fruit, red ripe, S. lycopersicoides IL LA42450.09
S0847LA4247fruit, red ripe, S. lycopersicoides IL LA42470
S0848LA4248fruit, red ripe, S. lycopersicoides IL LA42480.06
S0849LA4249Afruit, red ripe, S. lycopersicoides IL LA4249A0.07
S0850LA4249Bfruit, red ripe, S. lycopersicoides IL LA4249B0.05
S0851LA4250Afruit, red ripe, S. lycopersicoides IL LA4250A0.02
S0852LA4250Bfruit, red ripe, S. lycopersicoides IL LA4250B0.15
S0853LA4250Cfruit, red ripe, S. lycopersicoides IL LA4250C0.13
S0854LA4251fruit, red ripe, S. lycopersicoides IL LA42510.04
S0855LA4252Afruit, red ripe, S. lycopersicoides IL LA4252A0
S0856LA4252Bfruit, red ripe, S. lycopersicoides IL LA4252B0.02
S0857LA4252Cfruit, red ripe, S. lycopersicoides IL LA4252C0
S0858LA4252Efruit, red ripe, S. lycopersicoides IL LA4252E0
S0859LA4252Ffruit, red ripe, S. lycopersicoides IL LA4252F0
S0860LA4253fruit, red ripe, S. lycopersicoides IL LA42530.14
S0861LA4254fruit, red ripe, S. lycopersicoides IL LA42540.12
S0862LA4255fruit, red ripe, S. lycopersicoides IL LA42550.04
S0863LA4256fruit, red ripe, S. lycopersicoides IL LA42560.15
S0864LA4257fruit, red ripe, S. lycopersicoides IL LA42570
S0865LA4258fruit, red ripe, S. lycopersicoides IL LA42580.19
S0866LA4260fruit, red ripe, S. lycopersicoides IL LA42600
S0867LA4262Afruit, red ripe, S. lycopersicoides IL LA4262A0.08
S0868LA4262Bfruit, red ripe, S. lycopersicoides IL LA4262B0.03
S0869LA4263Afruit, red ripe, S. lycopersicoides IL LA4263A0
S0870LA4263Bfruit, red ripe, S. lycopersicoides IL LA4263B0.04
S0871LA4263Cfruit, red ripe, S. lycopersicoides IL LA4263C0
S0872LA4263Dfruit, red ripe, S. lycopersicoides IL LA4263D0.04
S0873LA4264Afruit, red ripe, S. lycopersicoides IL LA4264A0
S0874LA4264Bfruit, red ripe, S. lycopersicoides IL LA4264B0.13
S0875LA4266Afruit, red ripe, S. lycopersicoides IL LA4266A0
S0876LA4266Bfruit, red ripe, S. lycopersicoides IL LA4266B0.08
S0877LA4268fruit, red ripe, S. lycopersicoides IL LA42680.12
S0878LA4269fruit, red ripe, S. lycopersicoides IL LA42690.04
S0879LA4270Afruit, red ripe, S. lycopersicoides IL LA4270A0.39
S0880LA4270Bfruit, red ripe, S. lycopersicoides IL LA4270B0.28
S0881LA4272fruit, red ripe, S. lycopersicoides IL LA42720.05
S0882LA4273fruit, red ripe, S. lycopersicoides IL LA42730.17
S0883LA4274fruit, red ripe, S. lycopersicoides IL LA42740.09
S0884LA4275fruit, red ripe, S. lycopersicoides IL LA42750.02
S0885LA4276Afruit, red ripe, S. lycopersicoides IL LA4276A0.06
S0886LA4276Bfruit, red ripe, S. lycopersicoides IL LA4276B0.07
S0887LA4276Cfruit, red ripe, S. lycopersicoides IL LA4276C0.08
S0888LA4276Dfruit, red ripe, S. lycopersicoides IL LA4276D0.07
S0889LA4277fruit, red ripe, S. lycopersicoides IL LA42770.18
S0890LA4277Bfruit, red ripe, S. lycopersicoides IL LA4277B0
S0891LA4277Cfruit, red ripe, S. lycopersicoides IL LA4277C0
S0892LA4278Afruit, red ripe, S. lycopersicoides IL LA4278A0.06
S0893LA4278Bfruit, red ripe, S. lycopersicoides IL LA4278B0.11
S0894LA4279fruit, red ripe, S. lycopersicoides IL LA42790.02
S0895LA4280fruit, red ripe, S. lycopersicoides IL LA42800
S0896LA4281Afruit, red ripe, S. lycopersicoides IL LA4281A0.05
S0897LA4281Bfruit, red ripe, S. lycopersicoides IL LA4281B0.23
S0898LA4281Cfruit, red ripe, S. lycopersicoides IL LA4281C0.09
S0899LA4281Dfruit, red ripe, S. lycopersicoides IL LA4281D0.14
S0900LA4281Efruit, red ripe, S. lycopersicoides IL LA4281E0.05
S0901LA4282Afruit, red ripe, S. lycopersicoides IL LA4282A0.07
S0902LA4282Bfruit, red ripe, S. lycopersicoides IL LA4282B0.12
S0903LA4282Cfruit, red ripe, S. lycopersicoides IL LA4282C0.2
S0904LA4284fruit, red ripe, S. lycopersicoides IL LA42840.38
S0905LA4294Afruit, red ripe, S. lycopersicoides IL LA4294A0.08
S0906LA4294Bfruit, red ripe, S. lycopersicoides IL LA4294B0
S0907LA4295fruit, red ripe, S. lycopersicoides IL LA42950.04
S0908LA4296fruit, red ripe, S. lycopersicoides IL LA42960
S0909LA4297fruit, red ripe, S. lycopersicoides IL LA42970.02
S0910LA4298fruit, red ripe, S. lycopersicoides IL LA42980
S0911LA4299fruit, red ripe, S. lycopersicoides IL LA42990.05
S0912LA4300Afruit, red ripe, S. lycopersicoides IL LA4300A0.19
S0913LA4300Bfruit, red ripe, S. lycopersicoides IL LA4300B0.09
S0914LA4301Afruit, red ripe, S. lycopersicoides IL LA4301A0.11
S0915LA4303fruit, red ripe, S. lycopersicoides IL LA43030
S0916LA4305fruit, red ripe, S. lycopersicoides IL LA43050.03
S0917LA4306Afruit, red ripe, S. lycopersicoides IL LA4306A0
S0918LA4306Bfruit, red ripe, S. lycopersicoides IL LA4306B0.05
S0919LA4307fruit, red ripe, S. lycopersicoides IL LA43070.12
S0920LA4308fruit, red ripe, S. lycopersicoides IL LA43080
S0921LA4308Afruit, red ripe, S. lycopersicoides IL LA4308A0
S0922LA4309fruit, red ripe, S. lycopersicoides IL LA43090.06
S0923LA4310fruit, red ripe, S. lycopersicoides IL LA43100.14
S0924LA4311fruit, red ripe, S. lycopersicoides IL LA43110.25
S0925LA4312Afruit, red ripe, S. lycopersicoides IL LA4312A0
S0926LA4312Bfruit, red ripe, S. lycopersicoides IL LA4312B0.03
S0927LA4313Afruit, red ripe, S. lycopersicoides IL LA4313A0
S0928LA4313Bfruit, red ripe, S. lycopersicoides IL LA4313B0

Experiment: Transcriptome profiling of ripe fruits of S. pimpinellifolium RILs
sample IDgenotype descriptionRPM
S0953LA2093fruit, red ripe, S. pimpinellifolium LA20930.39
S0954NCEBR1fruit, red ripe, S. lycopersicum NCEBR11.1
S0955RIL-1fruit, red ripe, S. pimpinellifolium RIL-10.19
S0956RIL-3fruit, red ripe, S. pimpinellifolium RIL-30.04
S0957RIL-4fruit, red ripe, S. pimpinellifolium RIL-40.67
S0958RIL-5fruit, red ripe, S. pimpinellifolium RIL-50.15
S0959RIL-6fruit, red ripe, S. pimpinellifolium RIL-60.05
S0960RIL-7fruit, red ripe, S. pimpinellifolium RIL-70.84
S0961RIL-11fruit, red ripe, S. pimpinellifolium RIL-110.31
S0962RIL-12fruit, red ripe, S. pimpinellifolium RIL-120.44
S0963RIL-13fruit, red ripe, S. pimpinellifolium RIL-130.52
S0964RIL-14fruit, red ripe, S. pimpinellifolium RIL-140
S0965RIL-16fruit, red ripe, S. pimpinellifolium RIL-160.1
S0966RIL-18fruit, red ripe, S. pimpinellifolium RIL-180
S0967RIL-19fruit, red ripe, S. pimpinellifolium RIL-190.97
S0968RIL-20fruit, red ripe, S. pimpinellifolium RIL-200.07
S0969RIL-21fruit, red ripe, S. pimpinellifolium RIL-210.04
S0970RIL-22fruit, red ripe, S. pimpinellifolium RIL-220.1
S0971RIL-23fruit, red ripe, S. pimpinellifolium RIL-230.33
S0972RIL-24fruit, red ripe, S. pimpinellifolium RIL-240.25
S0973RIL-25fruit, red ripe, S. pimpinellifolium RIL-250.02
S0974RIL-26fruit, red ripe, S. pimpinellifolium RIL-260.11
S0975RIL-27fruit, red ripe, S. pimpinellifolium RIL-270.04
S0976RIL-28fruit, red ripe, S. pimpinellifolium RIL-280
S0977RIL-30fruit, red ripe, S. pimpinellifolium RIL-300.38
S0978RIL-31fruit, red ripe, S. pimpinellifolium RIL-310
S0979RIL-32fruit, red ripe, S. pimpinellifolium RIL-320.09
S0980RIL-33fruit, red ripe, S. pimpinellifolium RIL-330.09
S0981RIL-34fruit, red ripe, S. pimpinellifolium RIL-340.47
S0982RIL-35fruit, red ripe, S. pimpinellifolium RIL-350.71
S0983RIL-37fruit, red ripe, S. pimpinellifolium RIL-370.05
S0984RIL-38fruit, red ripe, S. pimpinellifolium RIL-380.26
S0985RIL-39fruit, red ripe, S. pimpinellifolium RIL-390.19
S0986RIL-41fruit, red ripe, S. pimpinellifolium RIL-410.13
S0987RIL-43fruit, red ripe, S. pimpinellifolium RIL-430.05
S0988RIL-45fruit, red ripe, S. pimpinellifolium RIL-450.04
S0989RIL-47fruit, red ripe, S. pimpinellifolium RIL-470.12
S0990RIL-48fruit, red ripe, S. pimpinellifolium RIL-480.08
S0991RIL-49fruit, red ripe, S. pimpinellifolium RIL-490.16
S0992RIL-50fruit, red ripe, S. pimpinellifolium RIL-500.12
S0993RIL-52fruit, red ripe, S. pimpinellifolium RIL-520.07
S0994RIL-53fruit, red ripe, S. pimpinellifolium RIL-530
S0995RIL-54fruit, red ripe, S. pimpinellifolium RIL-540.03
S0996RIL-55fruit, red ripe, S. pimpinellifolium RIL-550.15
S0997RIL-56fruit, red ripe, S. pimpinellifolium RIL-560
S0998RIL-57fruit, red ripe, S. pimpinellifolium RIL-570.08
S0999RIL-58fruit, red ripe, S. pimpinellifolium RIL-580.05
S1000RIL-62fruit, red ripe, S. pimpinellifolium RIL-620.22
S1001RIL-63fruit, red ripe, S. pimpinellifolium RIL-630
S1002RIL-65fruit, red ripe, S. pimpinellifolium RIL-650.35
S1003RIL-66fruit, red ripe, S. pimpinellifolium RIL-660.13
S1004RIL-67fruit, red ripe, S. pimpinellifolium RIL-670.05
S1005RIL-68fruit, red ripe, S. pimpinellifolium RIL-680
S1006RIL-69fruit, red ripe, S. pimpinellifolium RIL-690.05
S1007RIL-71fruit, red ripe, S. pimpinellifolium RIL-710.14
S1008RIL-72fruit, red ripe, S. pimpinellifolium RIL-720
S1009RIL-73fruit, red ripe, S. pimpinellifolium RIL-730.31
S1010RIL-75fruit, red ripe, S. pimpinellifolium RIL-750.18
S1011RIL-76fruit, red ripe, S. pimpinellifolium RIL-760.02
S1012RIL-77fruit, red ripe, S. pimpinellifolium RIL-770.06
S1013RIL-78fruit, red ripe, S. pimpinellifolium RIL-780.1
S1014RIL-79fruit, red ripe, S. pimpinellifolium RIL-790
S1015RIL-80fruit, red ripe, S. pimpinellifolium RIL-800.08
S1016RIL-81fruit, red ripe, S. pimpinellifolium RIL-810.13
S1017RIL-84fruit, red ripe, S. pimpinellifolium RIL-840.1
S1018RIL-85fruit, red ripe, S. pimpinellifolium RIL-850.06
S1019RIL-88fruit, red ripe, S. pimpinellifolium RIL-880.14
S1020RIL-90fruit, red ripe, S. pimpinellifolium RIL-900.02
S1021RIL-91fruit, red ripe, S. pimpinellifolium RIL-910.1
S1022RIL-95fruit, red ripe, S. pimpinellifolium RIL-950.03
S1023RIL-96fruit, red ripe, S. pimpinellifolium RIL-960.24
S1024RIL-97fruit, red ripe, S. pimpinellifolium RIL-970
S1025RIL-98fruit, red ripe, S. pimpinellifolium RIL-980.11
S1026RIL-99fruit, red ripe, S. pimpinellifolium RIL-990.05
S1027RIL-100fruit, red ripe, S. pimpinellifolium RIL-1000.13
S1028RIL-101fruit, red ripe, S. pimpinellifolium RIL-1010.07
S1029RIL-102fruit, red ripe, S. pimpinellifolium RIL-1020.17
S1030RIL-103fruit, red ripe, S. pimpinellifolium RIL-1030.03
S1031RIL-105fruit, red ripe, S. pimpinellifolium RIL-1050.05
S1032RIL-107fruit, red ripe, S. pimpinellifolium RIL-1070.06
S1033RIL-108fruit, red ripe, S. pimpinellifolium RIL-1080
S1034RIL-109fruit, red ripe, S. pimpinellifolium RIL-1090.03
S1035RIL-111fruit, red ripe, S. pimpinellifolium RIL-1110.1
S1036RIL-112fruit, red ripe, S. pimpinellifolium RIL-1120
S1037RIL-113fruit, red ripe, S. pimpinellifolium RIL-1130.04
S1038RIL-114fruit, red ripe, S. pimpinellifolium RIL-1140
S1039RIL-115fruit, red ripe, S. pimpinellifolium RIL-1150.06
S1040RIL-116fruit, red ripe, S. pimpinellifolium RIL-1160.03
S1041RIL-117fruit, red ripe, S. pimpinellifolium RIL-1170
S1042RIL-118fruit, red ripe, S. pimpinellifolium RIL-1180.05
S1043RIL-120fruit, red ripe, S. pimpinellifolium RIL-1200.23
S1044RIL-121fruit, red ripe, S. pimpinellifolium RIL-1210.05
S1045RIL-122fruit, red ripe, S. pimpinellifolium RIL-1220.03
S1046RIL-123fruit, red ripe, S. pimpinellifolium RIL-1230
S1047RIL-124fruit, red ripe, S. pimpinellifolium RIL-1240.22
S1048RIL-125fruit, red ripe, S. pimpinellifolium RIL-1250
S1049RIL-126fruit, red ripe, S. pimpinellifolium RIL-1260
S1050RIL-128fruit, red ripe, S. pimpinellifolium RIL-1280.05
S1051RIL-129fruit, red ripe, S. pimpinellifolium RIL-1290.11
S1052RIL-130fruit, red ripe, S. pimpinellifolium RIL-1300
S1053RIL-131fruit, red ripe, S. pimpinellifolium RIL-1310
S1054RIL-132fruit, red ripe, S. pimpinellifolium RIL-1320.16
S1055RIL-133fruit, red ripe, S. pimpinellifolium RIL-1330.12
S1056RIL-134fruit, red ripe, S. pimpinellifolium RIL-1340.22
S1057RIL-135fruit, red ripe, S. pimpinellifolium RIL-1350.15
S1058RIL-137fruit, red ripe, S. pimpinellifolium RIL-1370.07
S1059RIL-139fruit, red ripe, S. pimpinellifolium RIL-1390.09
S1060RIL-140fruit, red ripe, S. pimpinellifolium RIL-1400
S1061RIL-142fruit, red ripe, S. pimpinellifolium RIL-1420.05
S1062RIL-143fruit, red ripe, S. pimpinellifolium RIL-1430
S1063RIL-144fruit, red ripe, S. pimpinellifolium RIL-1440.08
S1064RIL-145fruit, red ripe, S. pimpinellifolium RIL-1450.06
S1065RIL-146fruit, red ripe, S. pimpinellifolium RIL-1460.09
S1066RIL-147fruit, red ripe, S. pimpinellifolium RIL-1470.09
S1067RIL-148fruit, red ripe, S. pimpinellifolium RIL-1480.07
S1068RIL-149fruit, red ripe, S. pimpinellifolium RIL-1490.12
S1069RIL-150fruit, red ripe, S. pimpinellifolium RIL-1500.14
S1070RIL-151fruit, red ripe, S. pimpinellifolium RIL-1510
S1071RIL-152fruit, red ripe, S. pimpinellifolium RIL-1520.24
S1072RIL-153fruit, red ripe, S. pimpinellifolium RIL-1530.18
S1073RIL-154fruit, red ripe, S. pimpinellifolium RIL-1540
S1074RIL-155fruit, red ripe, S. pimpinellifolium RIL-1550.07
S1075RIL-156fruit, red ripe, S. pimpinellifolium RIL-1560.27
S1076RIL-159fruit, red ripe, S. pimpinellifolium RIL-1590
S1077RIL-160fruit, red ripe, S. pimpinellifolium RIL-1600.06
S1078RIL-161fruit, red ripe, S. pimpinellifolium RIL-1610.09
S1079RIL-162fruit, red ripe, S. pimpinellifolium RIL-1620.12
S1080RIL-164fruit, red ripe, S. pimpinellifolium RIL-1640
S1081RIL-165fruit, red ripe, S. pimpinellifolium RIL-1650.03
S1082RIL-167fruit, red ripe, S. pimpinellifolium RIL-1670.33
S1083RIL-168fruit, red ripe, S. pimpinellifolium RIL-1680.03
S1084RIL-169fruit, red ripe, S. pimpinellifolium RIL-1690.24
S1085RIL-171fruit, red ripe, S. pimpinellifolium RIL-1710.11
S1086RIL-172fruit, red ripe, S. pimpinellifolium RIL-1720.04