Solyc01g106780 expression

Experiment: Transcriptome profiling of pennellii ILs
sample IDgenotype descriptionRPM
S0001M82fruit, red ripe, M820
S00021-1fruit, red ripe, S. pennellii IL1-10
S00031-1-2fruit, red ripe, S. pennellii IL1-1-20
S00041-1-3fruit, red ripe, S. pennellii IL1-1-30
S00051-2fruit, red ripe, S. pennellii IL1-20
S00061-3fruit, red ripe, S. pennellii IL1-30
S00071-4fruit, red ripe, S. pennellii IL1-40
S00081-4-18fruit, red ripe, S. pennellii IL1-4-180
S00092-1fruit, red ripe, S. pennellii IL2-10
S00102-1-1fruit, red ripe, S. pennellii IL2-1-10
S00112-2fruit, red ripe, S. pennellii IL2-20
S00122-3fruit, red ripe, S. pennellii IL2-30
S00132-4fruit, red ripe, S. pennellii IL2-40
S00142-5fruit, red ripe, S. pennellii IL2-50
S00152-6fruit, red ripe, S. pennellii IL2-60
S00162-6-5fruit, red ripe, S. pennellii IL2-6-50
S00173-1fruit, red ripe, S. pennellii IL3-10
S00183-2fruit, red ripe, S. pennellii IL3-20
S00203-4fruit, red ripe, S. pennellii IL3-40
S00213-5fruit, red ripe, S. pennellii IL3-50
S00224-1fruit, red ripe, S. pennellii IL4-10
S00234-1-1fruit, red ripe, S. pennellii IL4-1-10
S00244-2fruit, red ripe, S. pennellii IL4-20
S00254-3fruit, red ripe, S. pennellii IL4-30
S00264-3-2fruit, red ripe, S. pennellii IL4-3-20
S00274-4fruit, red ripe, S. pennellii IL4-40
S00285-1fruit, red ripe, S. pennellii IL5-10
S00295-2fruit, red ripe, S. pennellii IL5-20
S00305-3fruit, red ripe, S. pennellii IL5-30
S00315-4fruit, red ripe, S. pennellii IL5-40
S00325-5fruit, red ripe, S. pennellii IL5-50
S00346-2fruit, red ripe, S. pennellii IL6-20
S00356-2-2fruit, red ripe, S. pennellii IL6-2-20
S00366-3fruit, red ripe, S. pennellii IL6-30
S00376-4fruit, red ripe, S. pennellii IL6-40
S00387-1fruit, red ripe, S. pennellii IL7-10
S00397-2fruit, red ripe, S. pennellii IL7-20
S00407-3fruit, red ripe, S. pennellii IL7-30
S00417-4fruit, red ripe, S. pennellii IL7-40
S00427-4-1fruit, red ripe, S. pennellii IL7-4-10
S00437-5fruit, red ripe, S. pennellii IL7-50
S00447-5-5fruit, red ripe, S. pennellii IL7-5-50
S00458-1fruit, red ripe, S. pennellii IL8-10
S00468-1-1fruit, red ripe, S. pennellii IL8-1-10
S00478-1-5fruit, red ripe, S. pennellii IL8-1-50
S00488-2fruit, red ripe, S. pennellii IL8-20
S00498-2-1fruit, red ripe, S. pennellii IL8-2-10
S00508-3fruit, red ripe, S. pennellii IL8-30
S00518-3-1fruit, red ripe, S. pennellii IL8-3-10
S00529-1fruit, red ripe, S. pennellii IL9-10
S00539-1-2fruit, red ripe, S. pennellii IL9-1-20
S00549-1-3fruit, red ripe, S. pennellii IL9-1-30
S00559-2fruit, red ripe, S. pennellii IL9-20
S00569-2-5fruit, red ripe, S. pennellii IL9-2-50
S00579-2-6fruit, red ripe, S. pennellii IL9-2-60
S00589-3fruit, red ripe, S. pennellii IL9-30
S00599-3-1fruit, red ripe, S. pennellii IL9-3-10
S00609-3-2fruit, red ripe, S. pennellii IL9-3-20
S006110-1fruit, red ripe, S. pennellii IL10-10
S006210-1-1fruit, red ripe, S. pennellii IL10-1-10
S006310-2fruit, red ripe, S. pennellii IL10-20
S006410-2-2fruit, red ripe, S. pennellii IL10-2-20
S006510-3fruit, red ripe, S. pennellii IL10-30
S006611-1fruit, red ripe, S. pennellii IL11-10
S006711-2fruit, red ripe, S. pennellii IL11-20
S006811-3fruit, red ripe, S. pennellii IL11-30
S006911-4fruit, red ripe, S. pennellii IL11-40
S007011-4-1fruit, red ripe, S. pennellii IL11-4-10
S007112-1fruit, red ripe, S. pennellii IL12-10
S007212-1-1fruit, red ripe, S. pennellii IL12-1-10
S007312-2fruit, red ripe, S. pennellii IL12-20
S007412-3fruit, red ripe, S. pennellii IL12-30
S007512-3-1fruit, red ripe, S. pennellii IL12-3-10
S007612-4fruit, red ripe, S. pennellii IL12-40
S007712-4-1fruit, red ripe, S. pennellii IL12-4-10

Experiment: Transcriptome analysis of various tissues in tomato cultivar Heinz and the wild relative Solanum pimpinellifolium
sample IDgenotype descriptionRPM
S0584HeinzHeinz unopened flower buds0
S0585HeinzHeinz fully opened flowers0
S0586HeinzHeinz 1 cm fruits0
S0587HeinzHeinz 2 cm fruits0
S0588HeinzHeinz 3 cm fruits0
S0589HeinzHeinz mature green fruits0
S0590HeinzHeinz breaker fruits0
S0591HeinzHeinz breaker+10 fruits0
S0592HeinzHeinz roots0
S0593HeinzHeinz leaves0
S0594pimpinellifolium immature green fruits0
S0595pimpinellifolium breaker fruits0
S0596pimpinellifolium breaker+5 fruits0
S0597pimpinellifolium leaves0

Experiment: Transcriptome profiling of young flower buds of WT, sun, ovate and fs8.1 NILs in the LA1589 background
sample IDgenotype descriptionRPM
S0929LA1589LA1589 young flower buds at 4 days post-initiation of floral meristem19.5
S0930LA1589LA1589 young flower buds at 6 days post-initiation of floral meristem17.3
S0931LA1589LA1589 young flower buds at 8 days post-initiation of floral meristem20.58
S0932LA1589LA1589 young flower buds at 10 days post-initiation of floral meristem14.92
S0933LA1589LA1589 young flower buds at 13 days post-initiation of floral meristem18.34
S0934LA1589LA1589 young flower buds at 16 days post-initiation of floral meristem28.78
S0935sun NIL in the LA1589 backgroundsun young flower buds at 4 days post-initiation of floral meristem19.73
S0936sun NIL in the LA1589 backgroundsun young flower buds at 6 days post-initiation of floral meristem18.96
S0937sun NIL in the LA1589 backgroundsun young flower buds at 8 days post-initiation of floral meristem19.41
S0938sun NIL in the LA1589 backgroundsun young flower buds at 10 days post-initiation of floral meristem14.74
S0939sun NIL in the LA1589 backgroundsun young flower buds at 13 days post-initiation of floral meristem28.09
S0940sun NIL in the LA1589 backgroundsun young flower buds at 16 days post-initiation of floral meristem23.74
S0941ovate NIL in the LA1589 backgroundovate young flower buds at 4 days post-initiation of floral meristem18.93
S0942ovate NIL in the LA1589 backgroundovate young flower buds at 6 days post-initiation of floral meristem16.45
S0943ovate NIL in the LA1589 backgroundovate young flower buds at 8 days post-initiation of floral meristem18.74
S0944ovate NIL in the LA1589 backgroundovate young flower buds at 10 days post-initiation of floral meristem17.03
S0945ovate NIL in the LA1589 backgroundovate young flower buds at 13 days post-initiation of floral meristem13.47
S0946ovate NIL in the LA1589 backgroundovate young flower buds at 16 days post-initiation of floral meristem31.6
S0947fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 4 days post-initiation of floral meristem17.79
S0948fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 6 days post-initiation of floral meristem15.9
S0949fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 8 days post-initiation of floral meristem17.58
S0950fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 10 days post-initiation of floral meristem14.74
S0951fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 13 days post-initiation of floral meristem15.28
S0952fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 16 days post-initiation of floral meristem23.13

Experiment: Transcriptome analysis of various tissues in wild species S. pimpinellifolium, LA1589
sample IDgenotype descriptionRPM
S0608LA1589anthesis flowers (0DPA)21.89
S0609LA158910 days post anthesis fruit (10 DPA1)38.93
S0610LA158910 days post anthesis fruit 2 (10 DPA2)44.62
S0611LA158920 days post anthesis fruit (20DPA)13.2
S0612LA1589rippening fruit (33DPA)19.35
S0613LA1589cotyledons (COTYL)13
S0614LA1589hypocotyl (HYPO)30.31
S0615LA1589vegitative meristems (MERI)24
S0616LA1589mature leaves (ML)7.27
S0617LA1589whole root (ROOT)70.92
S0618LA1589young flower buds (YFB)22.23
S0619LA1589young leaves (YL)43.93

Experiment: Transcriptome sequencing of tomato leaves treated with different bacteria and PAMPs
sample IDgenotype descriptionRPM
S0620Rio Grande prf3 (deletion in Prf)mock PAMPs 30 min1.37
S0621Rio Grande prf3 (deletion in Prf)cold shock protein 22 (csp22) 30 min1.47
S0622Rio Grande prf3 (deletion in Prf)flagellin 22 (flg22) 30 min1.26
S0623Rio Grande prf3 (deletion in Prf)flagellin II-28 (flgII-28) 30 min1.17
S0624Rio Grande prf3 (deletion in Prf)Lipopolysaccharides (LPS) 30 min1.31
S0625Rio Grande prf3 (deletion in Prf)Peptidoglycan (PGN) 30 min1.45
S0626Rio Grande prf3 (deletion in Prf)mock PAMPs 6h4.15
S0627Rio Grande prf3 (deletion in Prf)cold shock protein 22 (csp22) 6 h6.12
S0628Rio Grande prf3 (deletion in Prf)flagellin 22 (flg22) 6h5.64
S0629Rio Grande prf3 (deletion in Prf)flagellin II-28 (flgII-28) 6h4.9
S0630Rio Grande prf3 (deletion in Prf)Lipopolysaccharides (LPS) 6 h6.53
S0631Rio Grande prf3 (deletion in Prf)Peptidoglycan (PGN) 6h 4.74
S0632Rio Grande prf3 (deletion in Prf)mock bacteria 30 min1.24
S0633Rio Grande prf3 (deletion in Prf)DC3000 30 min1.15
S0634Rio Grande prf3 (deletion in Prf)DC3000ΔhrcQ-U 30 min1.47
S0635Rio Grande prf3 (deletion in Prf)DC3000ΔhrcQ-UΔfliC 30 min1.56
S0636Rio Grande prf3 (deletion in Prf)DC3000Δ28 30 min1.36
S0637Rio Grande prf3 (deletion in Prf)DC3000ΔAvrPtoΔAvrPtoB 30 min0.97
S0638Rio Grande prf3 (deletion in Prf)Pseudomonas fluorescens 30 min1.21
S0639Rio Grande prf3 (deletion in Prf)Pseudomonas putida 30 min1.34
S0640Rio Grande prf3 (deletion in Prf)Agrobacterium tumefaciens 30 min1.33
S0641Rio Grande prf3 (deletion in Prf)mock bacteria 6 h4.81
S0642Rio Grande prf3 (deletion in Prf)DC3000 6 h4.93
S0643Rio Grande prf3 (deletion in Prf)DC3000ΔhrcQ-U 6 h5.1
S0644Rio Grande prf3 (deletion in Prf)DC3000ΔhrcQ-UΔfliC 6 h4.1
S0645Rio Grande prf3 (deletion in Prf)DC3000Δ28 6 h6.39
S0646Rio Grande prf3 (deletion in Prf)DC3000ΔAvrPtoΔAvrPtoB 6 h4.26
S0647Rio Grande prf3 (deletion in Prf)Pseudomonas fluorescens 6 h6.29
S0648Rio Grande prf3 (deletion in Prf)Pseudomonas putida 6 h4.79
S0649Rio Grande prf3 (deletion in Prf)Agrobacterium tumefaciens 6 h3.93

Experiment: Transcriptome or gene expression of various fruit tissue in FW3.2 NILs
sample IDgenotype descriptionRPM
S0671Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 5 Days Post Anthesis Pericarp27.8
S0672Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 5 Days Post Anthesis Pericarp30.75
S0673Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 7 Days Post Anthesis Pericarp31.48
S0674Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 7 Days Post Anthesis Pericarp36.63
S0675Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 10 Days Post Anthesis Pericarp34.76
S0676Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 10 Days Post Anthesis Pericarp38.58
S0677Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 5 Days Post Anthesis Seed34.02
S0678Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 5 Days Post Anthesis Seed35.95
S0679Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 7 Days Post Anthesis Seed26.12
S0680Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 7 Days Post Anthesis Seed26
S0681Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 10 Days Post Anthesis Seed17.63
S0682Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 10 Days Post Anthesis Seed17.53
S0683Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) young flower bud32.66
S0684Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) young flower bud41.56

Experiment: Tissue-specific transcriptome profiling of Solanum pimpinellifolium ovaries and fruit using LCM-coupled to RNA-seq
sample IDgenotype descriptionRPM
S0685LA1589LA1589, Ovule 0 dpa (SA1_D0_OV)11.97
S0686sunsun, Ovule 0 dpa (SA2_D0_OV)10.31
S0687LA1589LA1589, Placenta 0 dpa (SA1_D0_PL)9.82
S0688sunsun, Placenta 0 dpa (SA2_D0_PL)7.53
S0689LA1589LA1589, Septum 0 dpa (SA1_D0_SE)15.87
S0690sunsun, Septum 0 dpa (SA2_D0_SE)20.07
S0691LA1589LA1589, Pericarp 0 dpa (SA1_D0_PE)27.89
S0692sunsun, Pericarp 0 dpa (SA2_D0_PE)27.99
S0693LA1589LA1589, Embryo 4 dpa Fruit (SA1_D4_EM)5.14
S0694sunsun, Embryo 4 dpa Fruit (SA2_D4_EM)6.93
S0695LA1589LA1589, Endosperm 4 dpa Fruit (SA1_D4_ENDO)10.5
S0696sunsun, Endosperm 4 dpa Fruit (SA2_D4_ENDO)10.43
S0697LA1589LA1589, Seed Coat 4 dpa Fruit (SA1_D4_SC)10.92
S0698sunsun, Seed Coat 4 dpa Fruit (SA2_D4_SC)14.57
S0699LA1589LA1589, Funiculus 4 dpa Fruit (SA1_D4_FU)16.72
S0700sunsun, Funiculus 4 dpa Fruit (SA2_D4_FU)12.24
S0701LA1589LA1589, Placenta 4 dpa Fruit (SA1_D4_PL)17.22
S0702sunsun, Placenta 4 dpa Fruit (SA2_D4_PL)15.63
S0703LA1589LA1589, Septum 4 dpa Fruit (SA1_D4_SE)18.9
S0704sunsun, Septum 4 dpa Fruit (SA2_D4_SE)21.15
S0705LA1589LA1589, Pericarp 4 dpa Fruit (SA1_D4_PE)9.21
S0706sunsun, Pericarp 4 dpa Fruit (SA2_D4_PE)9.54

Experiment: Transcriptome sequencing of leaves of resistant (RG-PtoR) and susceptible (RG-prf3 and RG-prf19) tomato plants treated with Pst DC3000
sample IDgenotype descriptionRPM
S0740Rio Grande-PtoRDC3000 4 h0.96
S0741Rio Grande-prf3DC3000 4 h1.68
S0742Rio Grande-prf19DC3000 4 h1.6
S0743Rio Grande-PtoRDC3000 6 h2.15
S0744Rio Grande-prf3DC3000 6 h2.16
S0745Rio Grande-prf19DC3000 6 h2.27

Experiment: Transcriptome sequencing of tomato leaves trated with diferent Pst DC3000 mutant strains
sample IDgenotype descriptionRPM
S0746Rio Grande-PtoRDC3000ΔhopQ1-1 ΔfliC 6 h2.36
S0747Rio Grande-PtoRDC3000ΔhopQ1-1 ΔavrPto ΔavrPtoB 6 h1.68
S0748Rio Grande-PtoRDC3000ΔhopQ1-1 ΔavrPto ΔavrPtoB ΔfliC 6 h2.32

Experiment: Transcriptome profiling of anthesis-stage ovaries from the fs8.1 backcrossed lines in Rio Grande background
sample IDgenotype descriptionRPM
S0749fs8.1, backcrossed line 09S204, BC4F2, Rio Grande background09S204-ee, ovary(anthesis)0
S0750WT, backcrossed line 09S204, BC4F2, Rio Grande background09S204-pp, ovary(anthesis)0
S0751fs8.1, backcrossed line 09S236, BC3F2, Rio Grande background09S236-ee, ovary(anthesis)0
S0752WT, backcrossed line 09S236, BC3F2, Rio Grande background09S236-pp, ovary(anthesis)0
S0753fs8.1, backcrossed line 09S237, BC1F4, Rio Grande background09S237-ee, ovary(anthesis)0
S0754WT, backcrossed line 09S237, BC1F4, Rio Grande background09S237-pp, ovary(anthesis)0

Experiment: Domain-wise effect of AvrPto on the tomato transcriptome 6 hours post inoculation
sample IDgenotype descriptionRPM
S0755Rio Grande-prf3D28E (pCPP45::avrPto) 6 h3.81
S0756Rio Grande-prf3D28E (pCPP45::avrPto I96A) 6 h4.7
S0757Rio Grande-prf3D28E (pCPP45::avrPto 2xA) 6 h4.13
S0758Rio Grande-prf3D28E (pCPP45::avrPto I96A + 2xA) 6 h3.61
S0759Rio Grande-prf3Mock 6 h3.22

Experiment: Transcriptome sequencing of Pti1 silenced plants after treatment of Pst DC3000ΔAvrPtoΔAvrPtoB
sample IDgenotype descriptionRPM
S0658Rio Grande prf3 (deletion in Prf)Azygous of hpPti1 DC3000ΔAvrPtoΔAvrPtoB 3 h2.36
S0659Rio Grande prf3 (deletion in Prf)hpPti1-F10 DC3000ΔAvrPtoΔAvrPtoB 3 h 2.56
S0660Rio Grande prf3 (deletion in Prf)hpPti1-F27 DC3000ΔAvrPtoΔAvrPtoB 3 h3.28
S0661Rio Grande prf3 (deletion in Prf)Azygous of hpPti1 DC3000ΔAvrPtoΔAvrPtoB 6 h4
S0662Rio Grande prf3 (deletion in Prf), hairpin Pti1, line F10hpPti1-F10 DC3000ΔAvrPtoΔAvrPtoB 6 h3
S0663Rio Grande prf3 (deletion in Prf), hairpin Pti1, line F27hpPti1-F27 ΔAvrPtoΔAvrPtoB 6 h3.73

Experiment: Gene expression in IM/FM, 2 dpi, 4 dpi and 6 dpi floral buds of wild type, lc, fas and lc/fas in the LA1589 background
sample IDgenotype descriptionRPM
S1087LA15892dpi floral buds0
S1088lc2dpi floral buds0
S1089fas2dpi floral buds0
S1090lc/fas2dpi floral buds0
S1091LA15894dpi floral buds0
S1092lc4dpi floral buds0
S1093fas4dpi floral buds0
S1094lc/fas4dpi floral buds0
S1095LA15896dpi floral buds0
S1096lc6dpi floral buds0
S1097fas6dpi floral buds0
S1098lc/fas6dpi floral buds0
S1099LA1589floral and inflorescence meristem0
S1100lcfloral and inflorescence meristem0
S1101fasfloral and inflorescence meristem0
S1102lc/fasfloral and inflorescence meristem0
S1103LA1589sympodial shoot apical meristem0
S1104lcsympodial shoot apical meristem0
S1105fassympodial shoot apical meristem0
S1106lc/fassympodial shoot apical meristem0

Experiment: RNA-Seq analysis on tomato anthesis flowers of ovate/sov1 NILs in the LA1589 background
sample IDgenotype descriptionRPM
S0764LA1589LA1589, flowers33.48
S0765ovateovate, flowers34.14
S0766sov1sov1, flowers31.51
S0767ovate/sov1ovate/sov1, flowers34.55

Experiment: Transcriptome profiling of three fruit tissues from the fw11.3 NILs in cultivated background
sample IDgenotype descriptionRPM
S0768Rio Grande (fw11.3-D)fw11.3-D Pericarp, 10 Days Post Anthesis30.01
S0769Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 10 Days Post Anthesis21.88
S0770Rio Grande (fw11.3-D)fw11.3-D Columella, 10 Days Post Anthesis25.01
S0771Rio Grande (fw11.3-D)fw11.3-D Pericarp, 15 Days Post Anthesis25.65
S0772Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 15 Days Post Anthesis15
S0773Rio Grande (fw11.3-D)fw11.3-D Columella, 15 Days Post Anthesis19.57
S0774Rio Grande (fw11.3-D)fw11.3-D Pericarp, 25 Days Post Anthesis17.29
S0775Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 25 Days Post Anthesis9.38
S0776Rio Grande (fw11.3-D)fw11.3-D Columella, 25 Days Post Anthesis18.28
S0777Rio Grande (fw11.3-D)fw11.3-D Pericarp, 33 Days Post Anthesis20.15
S0778Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 33 Days Post Anthesis7.29
S0779Rio Grande (fw11.3-D)fw11.3-D Columella, 33 Days Post Anthesis17.58
S0780Rio Grande (fw11.3-D)fw11.3-D Pericarp, 4 Days Post Anthesis29.96
S0781Rio Grande (fw11.3-D)fw11.3-D Septum, Placenta and Columella, 4 Days Post Anthesis40.15
S0782Rio Grande (fw11.3-D)fw11.3-D Pericarp, 7 Days Post Anthesis30.29
S0783Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 7 Days Post Anthesis32.46
S0784Rio Grande (fw11.3-D)fw11.3-D Columella, 7 Days Post Anthesis27.55
S0785Rio Grande (fw11.3-D)fw11.3-D Pericarp, Turning15.12
S0786Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, Turning10.21
S0787Rio Grande (fw11.3-D)fw11.3-D Columella, Turning16.54
S0788Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 10 Days Post Anthesis26.56
S0789Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 10 Days Post Anthesis19.85
S0790Rio Grande (fw11.3-WT)fw11.3-WT Columella, 10 Days Post Anthesis22.96
S0791Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 15 Days Post Anthesis23.84
S0792Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 15 Days Post Anthesis11.92
S0793Rio Grande (fw11.3-WT)fw11.3-WT Columella, 15 Days Post Anthesis18.73
S0794Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 25 Days Post Anthesis16.78
S0795Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 25 Days Post Anthesis8.16
S0796Rio Grande (fw11.3-WT)fw11.3-WT Columella, 25 Days Post Anthesis19.48
S0797Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 33 Days Post Anthesis19.37
S0798Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 33 Days Post Anthesis7.47
S0799Rio Grande (fw11.3-WT)fw11.3-WT Columella, 33 Days Post Anthesis18
S0800Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 4 Days Post Anthesis32.9
S0801Rio Grande (fw11.3-WT)fw11.3-WT Septum, Placenta and Columella, 4 Days Post Anthesis40.93
S0802Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 7 Days Post Anthesis30.85
S0803Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 7 Days Post Anthesis28.93
S0804Rio Grande (fw11.3-WT)fw11.3-WT Columella, 7 Days Post Anthesis26.85
S0805Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, Turning16.89
S0806Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, Turning10.8
S0807Rio Grande (fw11.3-WT)fw11.3-WT Columella, Turning17.01

Experiment: Transcriptome profiling of three fruit tissues from the sun NILs in cultivated background
sample IDgenotype descriptionRPM
S0808Sun1642 (sun-WT)SA3 Pericarp and exocarp, 4 Days Post Anthesis23.54
S0809Sun1642 (sun-WT)SA3 Septum and seeds, 4 Days Post Anthesis26.66
S0810Sun1642 (sun-WT)SA3 Pericarp, 7 Days Post Anthesis25.26
S0811Sun1642 (sun-WT)SA3 Septum, 7 Days Post Anthesis26.44
S0812Sun1642 (sun-WT)SA3 Seeds, 7 Days Post Anthesis23.38
S0813Sun1642 (sun-WT)SA3 Pericarp, 10 Days Post Anthesis20.79
S0814Sun1642 (sun-WT)SA3 Septum, 10 Days Post Anthesis21.57
S0815Sun1642 (sun-WT)SA3 Seeds, 10 Days Post Anthesis21.37
S0816Sun1642 (sun-D)SA4 Pericarp and exocarp, 4 Days Post Anthesis34.2
S0817Sun1642 (sun-D)SA4 Septum and seeds, 4 Days Post Anthesis28.52
S0818Sun1642 (sun-D)SA4 Pericarp, 7 Days Post Anthesis23.49
S0819Sun1642 (sun-D)SA4 Septum, 7 Days Post Anthesis25.54
S0820Sun1642 (sun-D)SA4 Seeds, 7 Days Post Anthesis25.22
S0821Sun1642 (sun-D)SA4 Pericarp, 10 Days Post Anthesis23.79
S0822Sun1642 (sun-D)SA4 Septum, 10 Days Post Anthesis22.94
S0823Sun1642 (sun-D)SA4 Seeds, 10 Days Post Anthesis23.76

Experiment: Transcriptome profiling of ripe fruits of S. lycopersicoides ILs
sample IDgenotype descriptionRPM
S0824VF36fruit, red ripe, VF3610.88
S0825LA3882fruit, red ripe, S. lycopersicoides IL LA38826.9
S0826LA3886fruit, red ripe, S. lycopersicoides IL LA388610.79
S0827LA3892fruit, red ripe, S. lycopersicoides IL LA38928.51
S0828LA4230fruit, red ripe, S. lycopersicoides IL LA423014.85
S0829LA4231fruit, red ripe, S. lycopersicoides IL LA42318.51
S0830LA4232fruit, red ripe, S. lycopersicoides IL LA423210.66
S0831LA4233fruit, red ripe, S. lycopersicoides IL LA42339.82
S0832LA4234Afruit, red ripe, S. lycopersicoides IL LA4234A9.63
S0833LA4234Bfruit, red ripe, S. lycopersicoides IL LA4234B8.38
S0834LA4235fruit, red ripe, S. lycopersicoides IL LA42357.79
S0835LA4236Afruit, red ripe, S. lycopersicoides IL LA4236A7.13
S0836LA4237fruit, red ripe, S. lycopersicoides IL LA423710.93
S0837LA4238fruit, red ripe, S. lycopersicoides IL LA42388.65
S0838LA4239fruit, red ripe, S. lycopersicoides IL LA42397.65
S0839LA4241Afruit, red ripe, S. lycopersicoides IL LA4241A6.12
S0840LA4241Bfruit, red ripe, S. lycopersicoides IL LA4241B10.64
S0841LA4242Afruit, red ripe, S. lycopersicoides IL LA4242A8.2
S0842LA4242Bfruit, red ripe, S. lycopersicoides IL LA4242B8.13
S0843LA4242Cfruit, red ripe, S. lycopersicoides IL LA4242C9.4
S0844LA4243fruit, red ripe, S. lycopersicoides IL LA42438.92
S0845LA4244fruit, red ripe, S. lycopersicoides IL LA42448.82
S0846LA4245fruit, red ripe, S. lycopersicoides IL LA42458.89
S0847LA4247fruit, red ripe, S. lycopersicoides IL LA42478.67
S0848LA4248fruit, red ripe, S. lycopersicoides IL LA424810.99
S0849LA4249Afruit, red ripe, S. lycopersicoides IL LA4249A6.65
S0850LA4249Bfruit, red ripe, S. lycopersicoides IL LA4249B8.05
S0851LA4250Afruit, red ripe, S. lycopersicoides IL LA4250A9.53
S0852LA4250Bfruit, red ripe, S. lycopersicoides IL LA4250B9.87
S0853LA4250Cfruit, red ripe, S. lycopersicoides IL LA4250C10.03
S0854LA4251fruit, red ripe, S. lycopersicoides IL LA42517.69
S0855LA4252Afruit, red ripe, S. lycopersicoides IL LA4252A8.7
S0856LA4252Bfruit, red ripe, S. lycopersicoides IL LA4252B10.63
S0857LA4252Cfruit, red ripe, S. lycopersicoides IL LA4252C6.01
S0858LA4252Efruit, red ripe, S. lycopersicoides IL LA4252E5.91
S0859LA4252Ffruit, red ripe, S. lycopersicoides IL LA4252F6.26
S0860LA4253fruit, red ripe, S. lycopersicoides IL LA42536.44
S0861LA4254fruit, red ripe, S. lycopersicoides IL LA42549.96
S0862LA4255fruit, red ripe, S. lycopersicoides IL LA42557.67
S0863LA4256fruit, red ripe, S. lycopersicoides IL LA42569.42
S0864LA4257fruit, red ripe, S. lycopersicoides IL LA425710.02
S0865LA4258fruit, red ripe, S. lycopersicoides IL LA42588.38
S0866LA4260fruit, red ripe, S. lycopersicoides IL LA42606.09
S0867LA4262Afruit, red ripe, S. lycopersicoides IL LA4262A9.78
S0868LA4262Bfruit, red ripe, S. lycopersicoides IL LA4262B7.86
S0869LA4263Afruit, red ripe, S. lycopersicoides IL LA4263A10.36
S0870LA4263Bfruit, red ripe, S. lycopersicoides IL LA4263B8.69
S0871LA4263Cfruit, red ripe, S. lycopersicoides IL LA4263C8.75
S0872LA4263Dfruit, red ripe, S. lycopersicoides IL LA4263D8.54
S0873LA4264Afruit, red ripe, S. lycopersicoides IL LA4264A7.73
S0874LA4264Bfruit, red ripe, S. lycopersicoides IL LA4264B8.24
S0875LA4266Afruit, red ripe, S. lycopersicoides IL LA4266A10.78
S0876LA4266Bfruit, red ripe, S. lycopersicoides IL LA4266B9.13
S0877LA4268fruit, red ripe, S. lycopersicoides IL LA42689.71
S0878LA4269fruit, red ripe, S. lycopersicoides IL LA426910.1
S0879LA4270Afruit, red ripe, S. lycopersicoides IL LA4270A7.81
S0880LA4270Bfruit, red ripe, S. lycopersicoides IL LA4270B7.87
S0881LA4272fruit, red ripe, S. lycopersicoides IL LA42727.92
S0882LA4273fruit, red ripe, S. lycopersicoides IL LA427310.56
S0883LA4274fruit, red ripe, S. lycopersicoides IL LA42748.42
S0884LA4275fruit, red ripe, S. lycopersicoides IL LA42757.46
S0885LA4276Afruit, red ripe, S. lycopersicoides IL LA4276A8.61
S0886LA4276Bfruit, red ripe, S. lycopersicoides IL LA4276B10.68
S0887LA4276Cfruit, red ripe, S. lycopersicoides IL LA4276C7.59
S0888LA4276Dfruit, red ripe, S. lycopersicoides IL LA4276D7.69
S0889LA4277fruit, red ripe, S. lycopersicoides IL LA42776.83
S0890LA4277Bfruit, red ripe, S. lycopersicoides IL LA4277B3.75
S0891LA4277Cfruit, red ripe, S. lycopersicoides IL LA4277C6.4
S0892LA4278Afruit, red ripe, S. lycopersicoides IL LA4278A7.9
S0893LA4278Bfruit, red ripe, S. lycopersicoides IL LA4278B9.26
S0894LA4279fruit, red ripe, S. lycopersicoides IL LA42799.01
S0895LA4280fruit, red ripe, S. lycopersicoides IL LA42807.94
S0896LA4281Afruit, red ripe, S. lycopersicoides IL LA4281A9.85
S0897LA4281Bfruit, red ripe, S. lycopersicoides IL LA4281B8.82
S0898LA4281Cfruit, red ripe, S. lycopersicoides IL LA4281C9.81
S0899LA4281Dfruit, red ripe, S. lycopersicoides IL LA4281D9.4
S0900LA4281Efruit, red ripe, S. lycopersicoides IL LA4281E8.44
S0901LA4282Afruit, red ripe, S. lycopersicoides IL LA4282A11.53
S0902LA4282Bfruit, red ripe, S. lycopersicoides IL LA4282B11.64
S0903LA4282Cfruit, red ripe, S. lycopersicoides IL LA4282C9.55
S0904LA4284fruit, red ripe, S. lycopersicoides IL LA42848.85
S0905LA4294Afruit, red ripe, S. lycopersicoides IL LA4294A8.94
S0906LA4294Bfruit, red ripe, S. lycopersicoides IL LA4294B6.89
S0907LA4295fruit, red ripe, S. lycopersicoides IL LA42956.81
S0908LA4296fruit, red ripe, S. lycopersicoides IL LA42968.13
S0909LA4297fruit, red ripe, S. lycopersicoides IL LA42977.42
S0910LA4298fruit, red ripe, S. lycopersicoides IL LA42984.42
S0911LA4299fruit, red ripe, S. lycopersicoides IL LA42996.13
S0912LA4300Afruit, red ripe, S. lycopersicoides IL LA4300A7.3
S0913LA4300Bfruit, red ripe, S. lycopersicoides IL LA4300B4.77
S0914LA4301Afruit, red ripe, S. lycopersicoides IL LA4301A7.71
S0915LA4303fruit, red ripe, S. lycopersicoides IL LA43037.33
S0916LA4305fruit, red ripe, S. lycopersicoides IL LA430510.54
S0917LA4306Afruit, red ripe, S. lycopersicoides IL LA4306A6.25
S0918LA4306Bfruit, red ripe, S. lycopersicoides IL LA4306B7.44
S0919LA4307fruit, red ripe, S. lycopersicoides IL LA43077.74
S0920LA4308fruit, red ripe, S. lycopersicoides IL LA430811.06
S0921LA4308Afruit, red ripe, S. lycopersicoides IL LA4308A10.43
S0922LA4309fruit, red ripe, S. lycopersicoides IL LA43096.9
S0923LA4310fruit, red ripe, S. lycopersicoides IL LA431011.47
S0924LA4311fruit, red ripe, S. lycopersicoides IL LA431111.71
S0925LA4312Afruit, red ripe, S. lycopersicoides IL LA4312A5.91
S0926LA4312Bfruit, red ripe, S. lycopersicoides IL LA4312B11.14
S0927LA4313Afruit, red ripe, S. lycopersicoides IL LA4313A6.94
S0928LA4313Bfruit, red ripe, S. lycopersicoides IL LA4313B7.26

Experiment: Transcriptome profiling of ripe fruits of S. pimpinellifolium RILs
sample IDgenotype descriptionRPM
S0953LA2093fruit, red ripe, S. pimpinellifolium LA20939.76
S0954NCEBR1fruit, red ripe, S. lycopersicum NCEBR111.08
S0955RIL-1fruit, red ripe, S. pimpinellifolium RIL-15.73
S0956RIL-3fruit, red ripe, S. pimpinellifolium RIL-310.94
S0957RIL-4fruit, red ripe, S. pimpinellifolium RIL-47.71
S0958RIL-5fruit, red ripe, S. pimpinellifolium RIL-511.11
S0959RIL-6fruit, red ripe, S. pimpinellifolium RIL-611.71
S0960RIL-7fruit, red ripe, S. pimpinellifolium RIL-78.99
S0961RIL-11fruit, red ripe, S. pimpinellifolium RIL-119.49
S0962RIL-12fruit, red ripe, S. pimpinellifolium RIL-1210.97
S0963RIL-13fruit, red ripe, S. pimpinellifolium RIL-1313.75
S0964RIL-14fruit, red ripe, S. pimpinellifolium RIL-146.22
S0965RIL-16fruit, red ripe, S. pimpinellifolium RIL-1612.3
S0966RIL-18fruit, red ripe, S. pimpinellifolium RIL-1813.26
S0967RIL-19fruit, red ripe, S. pimpinellifolium RIL-1910.91
S0968RIL-20fruit, red ripe, S. pimpinellifolium RIL-204.15
S0969RIL-21fruit, red ripe, S. pimpinellifolium RIL-219.23
S0970RIL-22fruit, red ripe, S. pimpinellifolium RIL-2210.94
S0971RIL-23fruit, red ripe, S. pimpinellifolium RIL-238.12
S0972RIL-24fruit, red ripe, S. pimpinellifolium RIL-246.6
S0973RIL-25fruit, red ripe, S. pimpinellifolium RIL-2513.03
S0974RIL-26fruit, red ripe, S. pimpinellifolium RIL-268.64
S0975RIL-27fruit, red ripe, S. pimpinellifolium RIL-279.99
S0976RIL-28fruit, red ripe, S. pimpinellifolium RIL-2810.81
S0977RIL-30fruit, red ripe, S. pimpinellifolium RIL-309.77
S0978RIL-31fruit, red ripe, S. pimpinellifolium RIL-3113.92
S0979RIL-32fruit, red ripe, S. pimpinellifolium RIL-328.46
S0980RIL-33fruit, red ripe, S. pimpinellifolium RIL-3315.63
S0981RIL-34fruit, red ripe, S. pimpinellifolium RIL-3414.2
S0982RIL-35fruit, red ripe, S. pimpinellifolium RIL-3511.38
S0983RIL-37fruit, red ripe, S. pimpinellifolium RIL-378.69
S0984RIL-38fruit, red ripe, S. pimpinellifolium RIL-386.91
S0985RIL-39fruit, red ripe, S. pimpinellifolium RIL-397.96
S0986RIL-41fruit, red ripe, S. pimpinellifolium RIL-418.11
S0987RIL-43fruit, red ripe, S. pimpinellifolium RIL-439.93
S0988RIL-45fruit, red ripe, S. pimpinellifolium RIL-456.92
S0989RIL-47fruit, red ripe, S. pimpinellifolium RIL-477.18
S0990RIL-48fruit, red ripe, S. pimpinellifolium RIL-4810.36
S0991RIL-49fruit, red ripe, S. pimpinellifolium RIL-497.71
S0992RIL-50fruit, red ripe, S. pimpinellifolium RIL-507.93
S0993RIL-52fruit, red ripe, S. pimpinellifolium RIL-529.83
S0994RIL-53fruit, red ripe, S. pimpinellifolium RIL-535.45
S0995RIL-54fruit, red ripe, S. pimpinellifolium RIL-546.02
S0996RIL-55fruit, red ripe, S. pimpinellifolium RIL-556.26
S0997RIL-56fruit, red ripe, S. pimpinellifolium RIL-567.99
S0998RIL-57fruit, red ripe, S. pimpinellifolium RIL-5713.57
S0999RIL-58fruit, red ripe, S. pimpinellifolium RIL-586.95
S1000RIL-62fruit, red ripe, S. pimpinellifolium RIL-6213.7
S1001RIL-63fruit, red ripe, S. pimpinellifolium RIL-6310.7
S1002RIL-65fruit, red ripe, S. pimpinellifolium RIL-655.99
S1003RIL-66fruit, red ripe, S. pimpinellifolium RIL-6614.03
S1004RIL-67fruit, red ripe, S. pimpinellifolium RIL-676.72
S1005RIL-68fruit, red ripe, S. pimpinellifolium RIL-686.34
S1006RIL-69fruit, red ripe, S. pimpinellifolium RIL-6914.02
S1007RIL-71fruit, red ripe, S. pimpinellifolium RIL-7117.83
S1008RIL-72fruit, red ripe, S. pimpinellifolium RIL-726.29
S1009RIL-73fruit, red ripe, S. pimpinellifolium RIL-735.72
S1010RIL-75fruit, red ripe, S. pimpinellifolium RIL-756.94
S1011RIL-76fruit, red ripe, S. pimpinellifolium RIL-766.75
S1012RIL-77fruit, red ripe, S. pimpinellifolium RIL-7716.26
S1013RIL-78fruit, red ripe, S. pimpinellifolium RIL-789.72
S1014RIL-79fruit, red ripe, S. pimpinellifolium RIL-798.41
S1015RIL-80fruit, red ripe, S. pimpinellifolium RIL-809.53
S1016RIL-81fruit, red ripe, S. pimpinellifolium RIL-8115.9
S1017RIL-84fruit, red ripe, S. pimpinellifolium RIL-847.93
S1018RIL-85fruit, red ripe, S. pimpinellifolium RIL-8514.03
S1019RIL-88fruit, red ripe, S. pimpinellifolium RIL-884.77
S1020RIL-90fruit, red ripe, S. pimpinellifolium RIL-9015.62
S1021RIL-91fruit, red ripe, S. pimpinellifolium RIL-9112.26
S1022RIL-95fruit, red ripe, S. pimpinellifolium RIL-955.51
S1023RIL-96fruit, red ripe, S. pimpinellifolium RIL-968.44
S1024RIL-97fruit, red ripe, S. pimpinellifolium RIL-9710.57
S1025RIL-98fruit, red ripe, S. pimpinellifolium RIL-989.05
S1026RIL-99fruit, red ripe, S. pimpinellifolium RIL-998.75
S1027RIL-100fruit, red ripe, S. pimpinellifolium RIL-10015.09
S1028RIL-101fruit, red ripe, S. pimpinellifolium RIL-10111.99
S1029RIL-102fruit, red ripe, S. pimpinellifolium RIL-1024.8
S1030RIL-103fruit, red ripe, S. pimpinellifolium RIL-1035.38
S1031RIL-105fruit, red ripe, S. pimpinellifolium RIL-10513.71
S1032RIL-107fruit, red ripe, S. pimpinellifolium RIL-10713.11
S1033RIL-108fruit, red ripe, S. pimpinellifolium RIL-1088.67
S1034RIL-109fruit, red ripe, S. pimpinellifolium RIL-1099.59
S1035RIL-111fruit, red ripe, S. pimpinellifolium RIL-1115.47
S1036RIL-112fruit, red ripe, S. pimpinellifolium RIL-1126.27
S1037RIL-113fruit, red ripe, S. pimpinellifolium RIL-1138.3
S1038RIL-114fruit, red ripe, S. pimpinellifolium RIL-11410.72
S1039RIL-115fruit, red ripe, S. pimpinellifolium RIL-1156.86
S1040RIL-116fruit, red ripe, S. pimpinellifolium RIL-1165.58
S1041RIL-117fruit, red ripe, S. pimpinellifolium RIL-1176.78
S1042RIL-118fruit, red ripe, S. pimpinellifolium RIL-1187.46
S1043RIL-120fruit, red ripe, S. pimpinellifolium RIL-1206.09
S1044RIL-121fruit, red ripe, S. pimpinellifolium RIL-12111.2
S1045RIL-122fruit, red ripe, S. pimpinellifolium RIL-1224.54
S1046RIL-123fruit, red ripe, S. pimpinellifolium RIL-1239.4
S1047RIL-124fruit, red ripe, S. pimpinellifolium RIL-1249.18
S1048RIL-125fruit, red ripe, S. pimpinellifolium RIL-1258.96
S1049RIL-126fruit, red ripe, S. pimpinellifolium RIL-12615.09
S1050RIL-128fruit, red ripe, S. pimpinellifolium RIL-1287.93
S1051RIL-129fruit, red ripe, S. pimpinellifolium RIL-1298.5
S1052RIL-130fruit, red ripe, S. pimpinellifolium RIL-1308.48
S1053RIL-131fruit, red ripe, S. pimpinellifolium RIL-1315.56
S1054RIL-132fruit, red ripe, S. pimpinellifolium RIL-1329.25
S1055RIL-133fruit, red ripe, S. pimpinellifolium RIL-13311.71
S1056RIL-134fruit, red ripe, S. pimpinellifolium RIL-13413.58
S1057RIL-135fruit, red ripe, S. pimpinellifolium RIL-1358.28
S1058RIL-137fruit, red ripe, S. pimpinellifolium RIL-1375
S1059RIL-139fruit, red ripe, S. pimpinellifolium RIL-1395.55
S1060RIL-140fruit, red ripe, S. pimpinellifolium RIL-1406.54
S1061RIL-142fruit, red ripe, S. pimpinellifolium RIL-1427.24
S1062RIL-143fruit, red ripe, S. pimpinellifolium RIL-1437.41
S1063RIL-144fruit, red ripe, S. pimpinellifolium RIL-14413.62
S1064RIL-145fruit, red ripe, S. pimpinellifolium RIL-1455.69
S1065RIL-146fruit, red ripe, S. pimpinellifolium RIL-14611.09
S1066RIL-147fruit, red ripe, S. pimpinellifolium RIL-1479.59
S1067RIL-148fruit, red ripe, S. pimpinellifolium RIL-1486.28
S1068RIL-149fruit, red ripe, S. pimpinellifolium RIL-1494.69
S1069RIL-150fruit, red ripe, S. pimpinellifolium RIL-15012.05
S1070RIL-151fruit, red ripe, S. pimpinellifolium RIL-15113.93
S1071RIL-152fruit, red ripe, S. pimpinellifolium RIL-1524.75
S1072RIL-153fruit, red ripe, S. pimpinellifolium RIL-1534.02
S1073RIL-154fruit, red ripe, S. pimpinellifolium RIL-15411.28
S1074RIL-155fruit, red ripe, S. pimpinellifolium RIL-1556.83
S1075RIL-156fruit, red ripe, S. pimpinellifolium RIL-1569.39
S1076RIL-159fruit, red ripe, S. pimpinellifolium RIL-1599.9
S1077RIL-160fruit, red ripe, S. pimpinellifolium RIL-1607.89
S1078RIL-161fruit, red ripe, S. pimpinellifolium RIL-16112.15
S1079RIL-162fruit, red ripe, S. pimpinellifolium RIL-1629.2
S1080RIL-164fruit, red ripe, S. pimpinellifolium RIL-1646.99
S1081RIL-165fruit, red ripe, S. pimpinellifolium RIL-1657.67
S1082RIL-167fruit, red ripe, S. pimpinellifolium RIL-1678.67
S1083RIL-168fruit, red ripe, S. pimpinellifolium RIL-1686.11
S1084RIL-169fruit, red ripe, S. pimpinellifolium RIL-1699.69
S1085RIL-171fruit, red ripe, S. pimpinellifolium RIL-1718.48
S1086RIL-172fruit, red ripe, S. pimpinellifolium RIL-1725.77