Solyc08g016440 expression

Experiment: Transcriptome profiling of pennellii ILs
sample IDgenotype descriptionRPM
S0001M82fruit, red ripe, M8221.19
S00021-1fruit, red ripe, S. pennellii IL1-137.4
S00031-1-2fruit, red ripe, S. pennellii IL1-1-221.55
S00041-1-3fruit, red ripe, S. pennellii IL1-1-315.04
S00051-2fruit, red ripe, S. pennellii IL1-267.6
S00061-3fruit, red ripe, S. pennellii IL1-319.54
S00071-4fruit, red ripe, S. pennellii IL1-424.29
S00081-4-18fruit, red ripe, S. pennellii IL1-4-1817.95
S00092-1fruit, red ripe, S. pennellii IL2-117.05
S00102-1-1fruit, red ripe, S. pennellii IL2-1-127.61
S00112-2fruit, red ripe, S. pennellii IL2-225.34
S00122-3fruit, red ripe, S. pennellii IL2-316.11
S00132-4fruit, red ripe, S. pennellii IL2-415.9
S00142-5fruit, red ripe, S. pennellii IL2-518.72
S00152-6fruit, red ripe, S. pennellii IL2-642.9
S00162-6-5fruit, red ripe, S. pennellii IL2-6-511.27
S00173-1fruit, red ripe, S. pennellii IL3-130.27
S00183-2fruit, red ripe, S. pennellii IL3-215.18
S00203-4fruit, red ripe, S. pennellii IL3-412.92
S00213-5fruit, red ripe, S. pennellii IL3-517.29
S00224-1fruit, red ripe, S. pennellii IL4-145.73
S00234-1-1fruit, red ripe, S. pennellii IL4-1-115.76
S00244-2fruit, red ripe, S. pennellii IL4-246.97
S00254-3fruit, red ripe, S. pennellii IL4-326.47
S00264-3-2fruit, red ripe, S. pennellii IL4-3-224.46
S00274-4fruit, red ripe, S. pennellii IL4-430.46
S00285-1fruit, red ripe, S. pennellii IL5-127.79
S00295-2fruit, red ripe, S. pennellii IL5-237.6
S00305-3fruit, red ripe, S. pennellii IL5-312.65
S00315-4fruit, red ripe, S. pennellii IL5-496.33
S00325-5fruit, red ripe, S. pennellii IL5-526.41
S00346-2fruit, red ripe, S. pennellii IL6-217.91
S00356-2-2fruit, red ripe, S. pennellii IL6-2-213
S00366-3fruit, red ripe, S. pennellii IL6-315.12
S00376-4fruit, red ripe, S. pennellii IL6-412.12
S00387-1fruit, red ripe, S. pennellii IL7-112.43
S00397-2fruit, red ripe, S. pennellii IL7-213.21
S00407-3fruit, red ripe, S. pennellii IL7-317.43
S00417-4fruit, red ripe, S. pennellii IL7-432.14
S00427-4-1fruit, red ripe, S. pennellii IL7-4-124.79
S00437-5fruit, red ripe, S. pennellii IL7-539.24
S00447-5-5fruit, red ripe, S. pennellii IL7-5-539.43
S00458-1fruit, red ripe, S. pennellii IL8-10.12
S00468-1-1fruit, red ripe, S. pennellii IL8-1-10.09
S00478-1-5fruit, red ripe, S. pennellii IL8-1-529.1
S00488-2fruit, red ripe, S. pennellii IL8-237.87
S00498-2-1fruit, red ripe, S. pennellii IL8-2-157.09
S00508-3fruit, red ripe, S. pennellii IL8-323.8
S00518-3-1fruit, red ripe, S. pennellii IL8-3-128.31
S00529-1fruit, red ripe, S. pennellii IL9-135.45
S00539-1-2fruit, red ripe, S. pennellii IL9-1-242.47
S00549-1-3fruit, red ripe, S. pennellii IL9-1-36.91
S00559-2fruit, red ripe, S. pennellii IL9-264.97
S00569-2-5fruit, red ripe, S. pennellii IL9-2-521.36
S00579-2-6fruit, red ripe, S. pennellii IL9-2-618.18
S00589-3fruit, red ripe, S. pennellii IL9-323.37
S00599-3-1fruit, red ripe, S. pennellii IL9-3-133.7
S00609-3-2fruit, red ripe, S. pennellii IL9-3-231.87
S006110-1fruit, red ripe, S. pennellii IL10-147.28
S006210-1-1fruit, red ripe, S. pennellii IL10-1-110.29
S006310-2fruit, red ripe, S. pennellii IL10-216.94
S006410-2-2fruit, red ripe, S. pennellii IL10-2-237.47
S006510-3fruit, red ripe, S. pennellii IL10-344.06
S006611-1fruit, red ripe, S. pennellii IL11-124.13
S006711-2fruit, red ripe, S. pennellii IL11-234.6
S006811-3fruit, red ripe, S. pennellii IL11-329.23
S006911-4fruit, red ripe, S. pennellii IL11-414.45
S007011-4-1fruit, red ripe, S. pennellii IL11-4-111.68
S007112-1fruit, red ripe, S. pennellii IL12-113.54
S007212-1-1fruit, red ripe, S. pennellii IL12-1-113.79
S007312-2fruit, red ripe, S. pennellii IL12-212.6
S007412-3fruit, red ripe, S. pennellii IL12-326.61
S007512-3-1fruit, red ripe, S. pennellii IL12-3-113.32
S007612-4fruit, red ripe, S. pennellii IL12-447.55
S007712-4-1fruit, red ripe, S. pennellii IL12-4-159.39

Experiment: Transcriptome analysis of various tissues in tomato cultivar Heinz and the wild relative Solanum pimpinellifolium
sample IDgenotype descriptionRPM
S0584HeinzHeinz unopened flower buds4.12
S0585HeinzHeinz fully opened flowers7.72
S0586HeinzHeinz 1 cm fruits3.52
S0587HeinzHeinz 2 cm fruits4.15
S0588HeinzHeinz 3 cm fruits2.77
S0589HeinzHeinz mature green fruits7.95
S0590HeinzHeinz breaker fruits8.17
S0591HeinzHeinz breaker+10 fruits24.37
S0592HeinzHeinz roots1.95
S0593HeinzHeinz leaves3.91
S0594pimpinellifolium immature green fruits0.09
S0595pimpinellifolium breaker fruits0
S0596pimpinellifolium breaker+5 fruits0
S0597pimpinellifolium leaves0

Experiment: Transcriptome profiling of young flower buds of WT, sun, ovate and fs8.1 NILs in the LA1589 background
sample IDgenotype descriptionRPM
S0929LA1589LA1589 young flower buds at 4 days post-initiation of floral meristem0
S0930LA1589LA1589 young flower buds at 6 days post-initiation of floral meristem0
S0931LA1589LA1589 young flower buds at 8 days post-initiation of floral meristem0
S0932LA1589LA1589 young flower buds at 10 days post-initiation of floral meristem0
S0933LA1589LA1589 young flower buds at 13 days post-initiation of floral meristem0
S0934LA1589LA1589 young flower buds at 16 days post-initiation of floral meristem0
S0935sun NIL in the LA1589 backgroundsun young flower buds at 4 days post-initiation of floral meristem0
S0936sun NIL in the LA1589 backgroundsun young flower buds at 6 days post-initiation of floral meristem0
S0937sun NIL in the LA1589 backgroundsun young flower buds at 8 days post-initiation of floral meristem0
S0938sun NIL in the LA1589 backgroundsun young flower buds at 10 days post-initiation of floral meristem0
S0939sun NIL in the LA1589 backgroundsun young flower buds at 13 days post-initiation of floral meristem0
S0940sun NIL in the LA1589 backgroundsun young flower buds at 16 days post-initiation of floral meristem0
S0941ovate NIL in the LA1589 backgroundovate young flower buds at 4 days post-initiation of floral meristem0
S0942ovate NIL in the LA1589 backgroundovate young flower buds at 6 days post-initiation of floral meristem0
S0943ovate NIL in the LA1589 backgroundovate young flower buds at 8 days post-initiation of floral meristem0
S0944ovate NIL in the LA1589 backgroundovate young flower buds at 10 days post-initiation of floral meristem0
S0945ovate NIL in the LA1589 backgroundovate young flower buds at 13 days post-initiation of floral meristem0
S0946ovate NIL in the LA1589 backgroundovate young flower buds at 16 days post-initiation of floral meristem0
S0947fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 4 days post-initiation of floral meristem0.03
S0948fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 6 days post-initiation of floral meristem0
S0949fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 8 days post-initiation of floral meristem0
S0950fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 10 days post-initiation of floral meristem0
S0951fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 13 days post-initiation of floral meristem0
S0952fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 16 days post-initiation of floral meristem0

Experiment: Transcriptome analysis of various tissues in wild species S. pimpinellifolium, LA1589
sample IDgenotype descriptionRPM
S0608LA1589anthesis flowers (0DPA)0
S0609LA158910 days post anthesis fruit (10 DPA1)0
S0610LA158910 days post anthesis fruit 2 (10 DPA2)0
S0611LA158920 days post anthesis fruit (20DPA)0
S0612LA1589rippening fruit (33DPA)0.05
S0613LA1589cotyledons (COTYL)0
S0614LA1589hypocotyl (HYPO)0
S0615LA1589vegitative meristems (MERI)0
S0616LA1589mature leaves (ML)0
S0617LA1589whole root (ROOT)0
S0618LA1589young flower buds (YFB)0
S0619LA1589young leaves (YL)0

Experiment: Transcriptome sequencing of tomato leaves treated with different bacteria and PAMPs
sample IDgenotype descriptionRPM
S0620Rio Grande prf3 (deletion in Prf)mock PAMPs 30 min105.13
S0621Rio Grande prf3 (deletion in Prf)cold shock protein 22 (csp22) 30 min111.65
S0622Rio Grande prf3 (deletion in Prf)flagellin 22 (flg22) 30 min116.34
S0623Rio Grande prf3 (deletion in Prf)flagellin II-28 (flgII-28) 30 min104.56
S0624Rio Grande prf3 (deletion in Prf)Lipopolysaccharides (LPS) 30 min91.18
S0625Rio Grande prf3 (deletion in Prf)Peptidoglycan (PGN) 30 min107.62
S0626Rio Grande prf3 (deletion in Prf)mock PAMPs 6h2.66
S0627Rio Grande prf3 (deletion in Prf)cold shock protein 22 (csp22) 6 h6.1
S0628Rio Grande prf3 (deletion in Prf)flagellin 22 (flg22) 6h6.38
S0629Rio Grande prf3 (deletion in Prf)flagellin II-28 (flgII-28) 6h6.23
S0630Rio Grande prf3 (deletion in Prf)Lipopolysaccharides (LPS) 6 h4.03
S0631Rio Grande prf3 (deletion in Prf)Peptidoglycan (PGN) 6h 3.66
S0632Rio Grande prf3 (deletion in Prf)mock bacteria 30 min74.67
S0633Rio Grande prf3 (deletion in Prf)DC3000 30 min89.87
S0634Rio Grande prf3 (deletion in Prf)DC3000ΔhrcQ-U 30 min84.8
S0635Rio Grande prf3 (deletion in Prf)DC3000ΔhrcQ-UΔfliC 30 min72.65
S0636Rio Grande prf3 (deletion in Prf)DC3000Δ28 30 min83.07
S0637Rio Grande prf3 (deletion in Prf)DC3000ΔAvrPtoΔAvrPtoB 30 min89.39
S0638Rio Grande prf3 (deletion in Prf)Pseudomonas fluorescens 30 min91.85
S0639Rio Grande prf3 (deletion in Prf)Pseudomonas putida 30 min79.07
S0640Rio Grande prf3 (deletion in Prf)Agrobacterium tumefaciens 30 min83.83
S0641Rio Grande prf3 (deletion in Prf)mock bacteria 6 h4.6
S0642Rio Grande prf3 (deletion in Prf)DC3000 6 h3.49
S0643Rio Grande prf3 (deletion in Prf)DC3000ΔhrcQ-U 6 h4.19
S0644Rio Grande prf3 (deletion in Prf)DC3000ΔhrcQ-UΔfliC 6 h2.85
S0645Rio Grande prf3 (deletion in Prf)DC3000Δ28 6 h4.72
S0646Rio Grande prf3 (deletion in Prf)DC3000ΔAvrPtoΔAvrPtoB 6 h4.72
S0647Rio Grande prf3 (deletion in Prf)Pseudomonas fluorescens 6 h7.26
S0648Rio Grande prf3 (deletion in Prf)Pseudomonas putida 6 h6.49
S0649Rio Grande prf3 (deletion in Prf)Agrobacterium tumefaciens 6 h3.31

Experiment: Transcriptome or gene expression of various fruit tissue in FW3.2 NILs
sample IDgenotype descriptionRPM
S0671Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 5 Days Post Anthesis Pericarp4.86
S0672Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 5 Days Post Anthesis Pericarp8.37
S0673Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 7 Days Post Anthesis Pericarp5.42
S0674Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 7 Days Post Anthesis Pericarp6.27
S0675Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 10 Days Post Anthesis Pericarp2.9
S0676Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 10 Days Post Anthesis Pericarp4.26
S0677Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 5 Days Post Anthesis Seed9.22
S0678Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 5 Days Post Anthesis Seed10.49
S0679Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 7 Days Post Anthesis Seed5.2
S0680Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 7 Days Post Anthesis Seed5.88
S0681Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 10 Days Post Anthesis Seed2.63
S0682Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 10 Days Post Anthesis Seed3.06
S0683Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) young flower bud8.34
S0684Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) young flower bud7.8

Experiment: Tissue-specific transcriptome profiling of Solanum pimpinellifolium ovaries and fruit using LCM-coupled to RNA-seq
sample IDgenotype descriptionRPM
S0685LA1589LA1589, Ovule 0 dpa (SA1_D0_OV)2.6
S0686sunsun, Ovule 0 dpa (SA2_D0_OV)1.44
S0687LA1589LA1589, Placenta 0 dpa (SA1_D0_PL)2.78
S0688sunsun, Placenta 0 dpa (SA2_D0_PL)0.67
S0689LA1589LA1589, Septum 0 dpa (SA1_D0_SE)0.15
S0690sunsun, Septum 0 dpa (SA2_D0_SE)0.15
S0691LA1589LA1589, Pericarp 0 dpa (SA1_D0_PE)0.37
S0692sunsun, Pericarp 0 dpa (SA2_D0_PE)1.21
S0693LA1589LA1589, Embryo 4 dpa Fruit (SA1_D4_EM)0.61
S0694sunsun, Embryo 4 dpa Fruit (SA2_D4_EM)0.78
S0695LA1589LA1589, Endosperm 4 dpa Fruit (SA1_D4_ENDO)0.16
S0696sunsun, Endosperm 4 dpa Fruit (SA2_D4_ENDO)0.1
S0697LA1589LA1589, Seed Coat 4 dpa Fruit (SA1_D4_SC)0.64
S0698sunsun, Seed Coat 4 dpa Fruit (SA2_D4_SC)0.24
S0699LA1589LA1589, Funiculus 4 dpa Fruit (SA1_D4_FU)0.2
S0700sunsun, Funiculus 4 dpa Fruit (SA2_D4_FU)0.27
S0701LA1589LA1589, Placenta 4 dpa Fruit (SA1_D4_PL)0.08
S0702sunsun, Placenta 4 dpa Fruit (SA2_D4_PL)0.12
S0703LA1589LA1589, Septum 4 dpa Fruit (SA1_D4_SE)0.24
S0704sunsun, Septum 4 dpa Fruit (SA2_D4_SE)0.13
S0705LA1589LA1589, Pericarp 4 dpa Fruit (SA1_D4_PE)0.07
S0706sunsun, Pericarp 4 dpa Fruit (SA2_D4_PE)0.05

Experiment: Transcriptome sequencing of leaves of resistant (RG-PtoR) and susceptible (RG-prf3 and RG-prf19) tomato plants treated with Pst DC3000
sample IDgenotype descriptionRPM
S0740Rio Grande-PtoRDC3000 4 h9.28
S0741Rio Grande-prf3DC3000 4 h1.87
S0742Rio Grande-prf19DC3000 4 h2.48
S0743Rio Grande-PtoRDC3000 6 h8.54
S0744Rio Grande-prf3DC3000 6 h2.54
S0745Rio Grande-prf19DC3000 6 h2.02

Experiment: Transcriptome sequencing of tomato leaves trated with diferent Pst DC3000 mutant strains
sample IDgenotype descriptionRPM
S0746Rio Grande-PtoRDC3000ΔhopQ1-1 ΔfliC 6 h5.33
S0747Rio Grande-PtoRDC3000ΔhopQ1-1 ΔavrPto ΔavrPtoB 6 h1.29
S0748Rio Grande-PtoRDC3000ΔhopQ1-1 ΔavrPto ΔavrPtoB ΔfliC 6 h0.65

Experiment: Transcriptome profiling of anthesis-stage ovaries from the fs8.1 backcrossed lines in Rio Grande background
sample IDgenotype descriptionRPM
S0749fs8.1, backcrossed line 09S204, BC4F2, Rio Grande background09S204-ee, ovary(anthesis)6.87
S0750WT, backcrossed line 09S204, BC4F2, Rio Grande background09S204-pp, ovary(anthesis)0.17
S0751fs8.1, backcrossed line 09S236, BC3F2, Rio Grande background09S236-ee, ovary(anthesis)8.44
S0752WT, backcrossed line 09S236, BC3F2, Rio Grande background09S236-pp, ovary(anthesis)0
S0753fs8.1, backcrossed line 09S237, BC1F4, Rio Grande background09S237-ee, ovary(anthesis)8.21
S0754WT, backcrossed line 09S237, BC1F4, Rio Grande background09S237-pp, ovary(anthesis)0

Experiment: Domain-wise effect of AvrPto on the tomato transcriptome 6 hours post inoculation
sample IDgenotype descriptionRPM
S0755Rio Grande-prf3D28E (pCPP45::avrPto) 6 h2.87
S0756Rio Grande-prf3D28E (pCPP45::avrPto I96A) 6 h5.41
S0757Rio Grande-prf3D28E (pCPP45::avrPto 2xA) 6 h3.56
S0758Rio Grande-prf3D28E (pCPP45::avrPto I96A + 2xA) 6 h5.72
S0759Rio Grande-prf3Mock 6 h1.71

Experiment: Transcriptome sequencing of Pti1 silenced plants after treatment of Pst DC3000ΔAvrPtoΔAvrPtoB
sample IDgenotype descriptionRPM
S0658Rio Grande prf3 (deletion in Prf)Azygous of hpPti1 DC3000ΔAvrPtoΔAvrPtoB 3 h11.89
S0659Rio Grande prf3 (deletion in Prf)hpPti1-F10 DC3000ΔAvrPtoΔAvrPtoB 3 h 10.11
S0660Rio Grande prf3 (deletion in Prf)hpPti1-F27 DC3000ΔAvrPtoΔAvrPtoB 3 h11.97
S0661Rio Grande prf3 (deletion in Prf)Azygous of hpPti1 DC3000ΔAvrPtoΔAvrPtoB 6 h3.21
S0662Rio Grande prf3 (deletion in Prf), hairpin Pti1, line F10hpPti1-F10 DC3000ΔAvrPtoΔAvrPtoB 6 h2.41
S0663Rio Grande prf3 (deletion in Prf), hairpin Pti1, line F27hpPti1-F27 ΔAvrPtoΔAvrPtoB 6 h3.34

Experiment: Gene expression in IM/FM, 2 dpi, 4 dpi and 6 dpi floral buds of wild type, lc, fas and lc/fas in the LA1589 background
sample IDgenotype descriptionRPM
S1087LA15892dpi floral buds0
S1088lc2dpi floral buds0
S1089fas2dpi floral buds0
S1090lc/fas2dpi floral buds0
S1091LA15894dpi floral buds0
S1092lc4dpi floral buds0
S1093fas4dpi floral buds0
S1094lc/fas4dpi floral buds0
S1095LA15896dpi floral buds0
S1096lc6dpi floral buds0
S1097fas6dpi floral buds0
S1098lc/fas6dpi floral buds0
S1099LA1589floral and inflorescence meristem0
S1100lcfloral and inflorescence meristem0
S1101fasfloral and inflorescence meristem0
S1102lc/fasfloral and inflorescence meristem0
S1103LA1589sympodial shoot apical meristem0.21
S1104lcsympodial shoot apical meristem0
S1105fassympodial shoot apical meristem0
S1106lc/fassympodial shoot apical meristem0

Experiment: RNA-Seq analysis on tomato anthesis flowers of ovate/sov1 NILs in the LA1589 background
sample IDgenotype descriptionRPM
S0764LA1589LA1589, flowers0
S0765ovateovate, flowers0
S0766sov1sov1, flowers0
S0767ovate/sov1ovate/sov1, flowers0

Experiment: Transcriptome profiling of three fruit tissues from the fw11.3 NILs in cultivated background
sample IDgenotype descriptionRPM
S0768Rio Grande (fw11.3-D)fw11.3-D Pericarp, 10 Days Post Anthesis3.69
S0769Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 10 Days Post Anthesis3.85
S0770Rio Grande (fw11.3-D)fw11.3-D Columella, 10 Days Post Anthesis5.12
S0771Rio Grande (fw11.3-D)fw11.3-D Pericarp, 15 Days Post Anthesis5.03
S0772Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 15 Days Post Anthesis3.94
S0773Rio Grande (fw11.3-D)fw11.3-D Columella, 15 Days Post Anthesis5.25
S0774Rio Grande (fw11.3-D)fw11.3-D Pericarp, 25 Days Post Anthesis6.4
S0775Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 25 Days Post Anthesis6.06
S0776Rio Grande (fw11.3-D)fw11.3-D Columella, 25 Days Post Anthesis5.73
S0777Rio Grande (fw11.3-D)fw11.3-D Pericarp, 33 Days Post Anthesis4.51
S0778Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 33 Days Post Anthesis8.53
S0779Rio Grande (fw11.3-D)fw11.3-D Columella, 33 Days Post Anthesis4.75
S0780Rio Grande (fw11.3-D)fw11.3-D Pericarp, 4 Days Post Anthesis16.84
S0781Rio Grande (fw11.3-D)fw11.3-D Septum, Placenta and Columella, 4 Days Post Anthesis25.49
S0782Rio Grande (fw11.3-D)fw11.3-D Pericarp, 7 Days Post Anthesis8.25
S0783Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 7 Days Post Anthesis8.6
S0784Rio Grande (fw11.3-D)fw11.3-D Columella, 7 Days Post Anthesis11.93
S0785Rio Grande (fw11.3-D)fw11.3-D Pericarp, Turning13.47
S0786Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, Turning16.24
S0787Rio Grande (fw11.3-D)fw11.3-D Columella, Turning16.28
S0788Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 10 Days Post Anthesis7.1
S0789Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 10 Days Post Anthesis4.95
S0790Rio Grande (fw11.3-WT)fw11.3-WT Columella, 10 Days Post Anthesis7.63
S0791Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 15 Days Post Anthesis5.05
S0792Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 15 Days Post Anthesis4.49
S0793Rio Grande (fw11.3-WT)fw11.3-WT Columella, 15 Days Post Anthesis4.94
S0794Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 25 Days Post Anthesis6.24
S0795Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 25 Days Post Anthesis5.77
S0796Rio Grande (fw11.3-WT)fw11.3-WT Columella, 25 Days Post Anthesis6.96
S0797Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 33 Days Post Anthesis5.16
S0798Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 33 Days Post Anthesis11.21
S0799Rio Grande (fw11.3-WT)fw11.3-WT Columella, 33 Days Post Anthesis4.51
S0800Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 4 Days Post Anthesis11.37
S0801Rio Grande (fw11.3-WT)fw11.3-WT Septum, Placenta and Columella, 4 Days Post Anthesis19.7
S0802Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 7 Days Post Anthesis7.21
S0803Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 7 Days Post Anthesis8.15
S0804Rio Grande (fw11.3-WT)fw11.3-WT Columella, 7 Days Post Anthesis11.15
S0805Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, Turning13.52
S0806Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, Turning16.58
S0807Rio Grande (fw11.3-WT)fw11.3-WT Columella, Turning10.81

Experiment: Transcriptome profiling of three fruit tissues from the sun NILs in cultivated background
sample IDgenotype descriptionRPM
S0808Sun1642 (sun-WT)SA3 Pericarp and exocarp, 4 Days Post Anthesis3.36
S0809Sun1642 (sun-WT)SA3 Septum and seeds, 4 Days Post Anthesis3.88
S0810Sun1642 (sun-WT)SA3 Pericarp, 7 Days Post Anthesis3.47
S0811Sun1642 (sun-WT)SA3 Septum, 7 Days Post Anthesis3.56
S0812Sun1642 (sun-WT)SA3 Seeds, 7 Days Post Anthesis5.47
S0813Sun1642 (sun-WT)SA3 Pericarp, 10 Days Post Anthesis3.73
S0814Sun1642 (sun-WT)SA3 Septum, 10 Days Post Anthesis3.16
S0815Sun1642 (sun-WT)SA3 Seeds, 10 Days Post Anthesis2.31
S0816Sun1642 (sun-D)SA4 Pericarp and exocarp, 4 Days Post Anthesis6.17
S0817Sun1642 (sun-D)SA4 Septum and seeds, 4 Days Post Anthesis4.38
S0818Sun1642 (sun-D)SA4 Pericarp, 7 Days Post Anthesis2.52
S0819Sun1642 (sun-D)SA4 Septum, 7 Days Post Anthesis4.16
S0820Sun1642 (sun-D)SA4 Seeds, 7 Days Post Anthesis2.39
S0821Sun1642 (sun-D)SA4 Pericarp, 10 Days Post Anthesis3.14
S0822Sun1642 (sun-D)SA4 Septum, 10 Days Post Anthesis2.6
S0823Sun1642 (sun-D)SA4 Seeds, 10 Days Post Anthesis2.34

Experiment: Transcriptome profiling of ripe fruits of S. lycopersicoides ILs
sample IDgenotype descriptionRPM
S0824VF36fruit, red ripe, VF3610.83
S0825LA3882fruit, red ripe, S. lycopersicoides IL LA38823.93
S0826LA3886fruit, red ripe, S. lycopersicoides IL LA38863.3
S0827LA3892fruit, red ripe, S. lycopersicoides IL LA38924.25
S0828LA4230fruit, red ripe, S. lycopersicoides IL LA42302.5
S0829LA4231fruit, red ripe, S. lycopersicoides IL LA423132.18
S0830LA4232fruit, red ripe, S. lycopersicoides IL LA42327.28
S0831LA4233fruit, red ripe, S. lycopersicoides IL LA42332.13
S0832LA4234Afruit, red ripe, S. lycopersicoides IL LA4234A4.37
S0833LA4234Bfruit, red ripe, S. lycopersicoides IL LA4234B3.53
S0834LA4235fruit, red ripe, S. lycopersicoides IL LA42358.2
S0835LA4236Afruit, red ripe, S. lycopersicoides IL LA4236A3.02
S0836LA4237fruit, red ripe, S. lycopersicoides IL LA42374.02
S0837LA4238fruit, red ripe, S. lycopersicoides IL LA42384.76
S0838LA4239fruit, red ripe, S. lycopersicoides IL LA42395.35
S0839LA4241Afruit, red ripe, S. lycopersicoides IL LA4241A0.08
S0840LA4241Bfruit, red ripe, S. lycopersicoides IL LA4241B0
S0841LA4242Afruit, red ripe, S. lycopersicoides IL LA4242A14.42
S0842LA4242Bfruit, red ripe, S. lycopersicoides IL LA4242B6.85
S0843LA4242Cfruit, red ripe, S. lycopersicoides IL LA4242C4.46
S0844LA4243fruit, red ripe, S. lycopersicoides IL LA424310.94
S0845LA4244fruit, red ripe, S. lycopersicoides IL LA42443.96
S0846LA4245fruit, red ripe, S. lycopersicoides IL LA42452.7
S0847LA4247fruit, red ripe, S. lycopersicoides IL LA42475.88
S0848LA4248fruit, red ripe, S. lycopersicoides IL LA42484.21
S0849LA4249Afruit, red ripe, S. lycopersicoides IL LA4249A9.51
S0850LA4249Bfruit, red ripe, S. lycopersicoides IL LA4249B17.78
S0851LA4250Afruit, red ripe, S. lycopersicoides IL LA4250A4.55
S0852LA4250Bfruit, red ripe, S. lycopersicoides IL LA4250B6.04
S0853LA4250Cfruit, red ripe, S. lycopersicoides IL LA4250C6.26
S0854LA4251fruit, red ripe, S. lycopersicoides IL LA42514.52
S0855LA4252Afruit, red ripe, S. lycopersicoides IL LA4252A1.45
S0856LA4252Bfruit, red ripe, S. lycopersicoides IL LA4252B1.08
S0857LA4252Cfruit, red ripe, S. lycopersicoides IL LA4252C3.24
S0858LA4252Efruit, red ripe, S. lycopersicoides IL LA4252E0.3
S0859LA4252Ffruit, red ripe, S. lycopersicoides IL LA4252F2.37
S0860LA4253fruit, red ripe, S. lycopersicoides IL LA42532.89
S0861LA4254fruit, red ripe, S. lycopersicoides IL LA42544.43
S0862LA4255fruit, red ripe, S. lycopersicoides IL LA42553.21
S0863LA4256fruit, red ripe, S. lycopersicoides IL LA42563.35
S0864LA4257fruit, red ripe, S. lycopersicoides IL LA42573.97
S0865LA4258fruit, red ripe, S. lycopersicoides IL LA42588.64
S0866LA4260fruit, red ripe, S. lycopersicoides IL LA42602.09
S0867LA4262Afruit, red ripe, S. lycopersicoides IL LA4262A4.06
S0868LA4262Bfruit, red ripe, S. lycopersicoides IL LA4262B3.01
S0869LA4263Afruit, red ripe, S. lycopersicoides IL LA4263A6.53
S0870LA4263Bfruit, red ripe, S. lycopersicoides IL LA4263B1.7
S0871LA4263Cfruit, red ripe, S. lycopersicoides IL LA4263C2.45
S0872LA4263Dfruit, red ripe, S. lycopersicoides IL LA4263D0
S0873LA4264Afruit, red ripe, S. lycopersicoides IL LA4264A5.77
S0874LA4264Bfruit, red ripe, S. lycopersicoides IL LA4264B3.71
S0875LA4266Afruit, red ripe, S. lycopersicoides IL LA4266A5.38
S0876LA4266Bfruit, red ripe, S. lycopersicoides IL LA4266B8.71
S0877LA4268fruit, red ripe, S. lycopersicoides IL LA42685.77
S0878LA4269fruit, red ripe, S. lycopersicoides IL LA42697.55
S0879LA4270Afruit, red ripe, S. lycopersicoides IL LA4270A10.35
S0880LA4270Bfruit, red ripe, S. lycopersicoides IL LA4270B24.54
S0881LA4272fruit, red ripe, S. lycopersicoides IL LA42723.2
S0882LA4273fruit, red ripe, S. lycopersicoides IL LA427311.5
S0883LA4274fruit, red ripe, S. lycopersicoides IL LA42745.65
S0884LA4275fruit, red ripe, S. lycopersicoides IL LA42754.33
S0885LA4276Afruit, red ripe, S. lycopersicoides IL LA4276A14.42
S0886LA4276Bfruit, red ripe, S. lycopersicoides IL LA4276B5.93
S0887LA4276Cfruit, red ripe, S. lycopersicoides IL LA4276C5.13
S0888LA4276Dfruit, red ripe, S. lycopersicoides IL LA4276D3.8
S0889LA4277fruit, red ripe, S. lycopersicoides IL LA427711.72
S0890LA4277Bfruit, red ripe, S. lycopersicoides IL LA4277B10.42
S0891LA4277Cfruit, red ripe, S. lycopersicoides IL LA4277C8.3
S0892LA4278Afruit, red ripe, S. lycopersicoides IL LA4278A27.77
S0893LA4278Bfruit, red ripe, S. lycopersicoides IL LA4278B24.85
S0894LA4279fruit, red ripe, S. lycopersicoides IL LA42792.58
S0895LA4280fruit, red ripe, S. lycopersicoides IL LA428010.21
S0896LA4281Afruit, red ripe, S. lycopersicoides IL LA4281A3.73
S0897LA4281Bfruit, red ripe, S. lycopersicoides IL LA4281B7.81
S0898LA4281Cfruit, red ripe, S. lycopersicoides IL LA4281C6.99
S0899LA4281Dfruit, red ripe, S. lycopersicoides IL LA4281D6.22
S0900LA4281Efruit, red ripe, S. lycopersicoides IL LA4281E4.33
S0901LA4282Afruit, red ripe, S. lycopersicoides IL LA4282A0.06
S0902LA4282Bfruit, red ripe, S. lycopersicoides IL LA4282B2.92
S0903LA4282Cfruit, red ripe, S. lycopersicoides IL LA4282C3.67
S0904LA4284fruit, red ripe, S. lycopersicoides IL LA42845
S0905LA4294Afruit, red ripe, S. lycopersicoides IL LA4294A2.94
S0906LA4294Bfruit, red ripe, S. lycopersicoides IL LA4294B17.48
S0907LA4295fruit, red ripe, S. lycopersicoides IL LA42955.19
S0908LA4296fruit, red ripe, S. lycopersicoides IL LA42964.08
S0909LA4297fruit, red ripe, S. lycopersicoides IL LA42976.27
S0910LA4298fruit, red ripe, S. lycopersicoides IL LA42983.78
S0911LA4299fruit, red ripe, S. lycopersicoides IL LA42998.45
S0912LA4300Afruit, red ripe, S. lycopersicoides IL LA4300A18.42
S0913LA4300Bfruit, red ripe, S. lycopersicoides IL LA4300B13.14
S0914LA4301Afruit, red ripe, S. lycopersicoides IL LA4301A0.21
S0915LA4303fruit, red ripe, S. lycopersicoides IL LA43037.58
S0916LA4305fruit, red ripe, S. lycopersicoides IL LA43053.62
S0917LA4306Afruit, red ripe, S. lycopersicoides IL LA4306A3.48
S0918LA4306Bfruit, red ripe, S. lycopersicoides IL LA4306B0
S0919LA4307fruit, red ripe, S. lycopersicoides IL LA43073.27
S0920LA4308fruit, red ripe, S. lycopersicoides IL LA43083.69
S0921LA4308Afruit, red ripe, S. lycopersicoides IL LA4308A6.3
S0922LA4309fruit, red ripe, S. lycopersicoides IL LA43094.9
S0923LA4310fruit, red ripe, S. lycopersicoides IL LA43109.19
S0924LA4311fruit, red ripe, S. lycopersicoides IL LA43113.93
S0925LA4312Afruit, red ripe, S. lycopersicoides IL LA4312A0
S0926LA4312Bfruit, red ripe, S. lycopersicoides IL LA4312B0.07
S0927LA4313Afruit, red ripe, S. lycopersicoides IL LA4313A7.1
S0928LA4313Bfruit, red ripe, S. lycopersicoides IL LA4313B8.67

Experiment: Transcriptome profiling of ripe fruits of S. pimpinellifolium RILs
sample IDgenotype descriptionRPM
S0953LA2093fruit, red ripe, S. pimpinellifolium LA20930
S0954NCEBR1fruit, red ripe, S. lycopersicum NCEBR16.89
S0955RIL-1fruit, red ripe, S. pimpinellifolium RIL-11.9
S0956RIL-3fruit, red ripe, S. pimpinellifolium RIL-33.09
S0957RIL-4fruit, red ripe, S. pimpinellifolium RIL-40
S0958RIL-5fruit, red ripe, S. pimpinellifolium RIL-55.07
S0959RIL-6fruit, red ripe, S. pimpinellifolium RIL-60
S0960RIL-7fruit, red ripe, S. pimpinellifolium RIL-72.77
S0961RIL-11fruit, red ripe, S. pimpinellifolium RIL-110.62
S0962RIL-12fruit, red ripe, S. pimpinellifolium RIL-120.93
S0963RIL-13fruit, red ripe, S. pimpinellifolium RIL-132.1
S0964RIL-14fruit, red ripe, S. pimpinellifolium RIL-141.29
S0965RIL-16fruit, red ripe, S. pimpinellifolium RIL-162.03
S0966RIL-18fruit, red ripe, S. pimpinellifolium RIL-183.51
S0967RIL-19fruit, red ripe, S. pimpinellifolium RIL-192.76
S0968RIL-20fruit, red ripe, S. pimpinellifolium RIL-200
S0969RIL-21fruit, red ripe, S. pimpinellifolium RIL-210
S0970RIL-22fruit, red ripe, S. pimpinellifolium RIL-220
S0971RIL-23fruit, red ripe, S. pimpinellifolium RIL-235.67
S0972RIL-24fruit, red ripe, S. pimpinellifolium RIL-240.05
S0973RIL-25fruit, red ripe, S. pimpinellifolium RIL-250.05
S0974RIL-26fruit, red ripe, S. pimpinellifolium RIL-260
S0975RIL-27fruit, red ripe, S. pimpinellifolium RIL-270.06
S0976RIL-28fruit, red ripe, S. pimpinellifolium RIL-284.66
S0977RIL-30fruit, red ripe, S. pimpinellifolium RIL-300
S0978RIL-31fruit, red ripe, S. pimpinellifolium RIL-313.84
S0979RIL-32fruit, red ripe, S. pimpinellifolium RIL-324.07
S0980RIL-33fruit, red ripe, S. pimpinellifolium RIL-336.76
S0981RIL-34fruit, red ripe, S. pimpinellifolium RIL-342.88
S0982RIL-35fruit, red ripe, S. pimpinellifolium RIL-350
S0983RIL-37fruit, red ripe, S. pimpinellifolium RIL-370
S0984RIL-38fruit, red ripe, S. pimpinellifolium RIL-382.95
S0985RIL-39fruit, red ripe, S. pimpinellifolium RIL-390
S0986RIL-41fruit, red ripe, S. pimpinellifolium RIL-413.71
S0987RIL-43fruit, red ripe, S. pimpinellifolium RIL-430
S0988RIL-45fruit, red ripe, S. pimpinellifolium RIL-450
S0989RIL-47fruit, red ripe, S. pimpinellifolium RIL-475.24
S0990RIL-48fruit, red ripe, S. pimpinellifolium RIL-486.13
S0991RIL-49fruit, red ripe, S. pimpinellifolium RIL-496.42
S0992RIL-50fruit, red ripe, S. pimpinellifolium RIL-506.23
S0993RIL-52fruit, red ripe, S. pimpinellifolium RIL-523.4
S0994RIL-53fruit, red ripe, S. pimpinellifolium RIL-532.4
S0995RIL-54fruit, red ripe, S. pimpinellifolium RIL-546.86
S0996RIL-55fruit, red ripe, S. pimpinellifolium RIL-553.13
S0997RIL-56fruit, red ripe, S. pimpinellifolium RIL-566.42
S0998RIL-57fruit, red ripe, S. pimpinellifolium RIL-574.86
S0999RIL-58fruit, red ripe, S. pimpinellifolium RIL-582.22
S1000RIL-62fruit, red ripe, S. pimpinellifolium RIL-623.29
S1001RIL-63fruit, red ripe, S. pimpinellifolium RIL-634.81
S1002RIL-65fruit, red ripe, S. pimpinellifolium RIL-650
S1003RIL-66fruit, red ripe, S. pimpinellifolium RIL-662.38
S1004RIL-67fruit, red ripe, S. pimpinellifolium RIL-673.39
S1005RIL-68fruit, red ripe, S. pimpinellifolium RIL-684.89
S1006RIL-69fruit, red ripe, S. pimpinellifolium RIL-690
S1007RIL-71fruit, red ripe, S. pimpinellifolium RIL-713.04
S1008RIL-72fruit, red ripe, S. pimpinellifolium RIL-720
S1009RIL-73fruit, red ripe, S. pimpinellifolium RIL-730
S1010RIL-75fruit, red ripe, S. pimpinellifolium RIL-751.58
S1011RIL-76fruit, red ripe, S. pimpinellifolium RIL-764.22
S1012RIL-77fruit, red ripe, S. pimpinellifolium RIL-771.99
S1013RIL-78fruit, red ripe, S. pimpinellifolium RIL-782.54
S1014RIL-79fruit, red ripe, S. pimpinellifolium RIL-790
S1015RIL-80fruit, red ripe, S. pimpinellifolium RIL-801.98
S1016RIL-81fruit, red ripe, S. pimpinellifolium RIL-810
S1017RIL-84fruit, red ripe, S. pimpinellifolium RIL-840.06
S1018RIL-85fruit, red ripe, S. pimpinellifolium RIL-853.52
S1019RIL-88fruit, red ripe, S. pimpinellifolium RIL-880
S1020RIL-90fruit, red ripe, S. pimpinellifolium RIL-902.4
S1021RIL-91fruit, red ripe, S. pimpinellifolium RIL-914.95
S1022RIL-95fruit, red ripe, S. pimpinellifolium RIL-952.55
S1023RIL-96fruit, red ripe, S. pimpinellifolium RIL-964.4
S1024RIL-97fruit, red ripe, S. pimpinellifolium RIL-972.86
S1025RIL-98fruit, red ripe, S. pimpinellifolium RIL-983.72
S1026RIL-99fruit, red ripe, S. pimpinellifolium RIL-992.24
S1027RIL-100fruit, red ripe, S. pimpinellifolium RIL-1004.42
S1028RIL-101fruit, red ripe, S. pimpinellifolium RIL-1013.31
S1029RIL-102fruit, red ripe, S. pimpinellifolium RIL-1020
S1030RIL-103fruit, red ripe, S. pimpinellifolium RIL-1030
S1031RIL-105fruit, red ripe, S. pimpinellifolium RIL-1053.03
S1032RIL-107fruit, red ripe, S. pimpinellifolium RIL-1071.3
S1033RIL-108fruit, red ripe, S. pimpinellifolium RIL-1081.83
S1034RIL-109fruit, red ripe, S. pimpinellifolium RIL-1091.3
S1035RIL-111fruit, red ripe, S. pimpinellifolium RIL-1111.43
S1036RIL-112fruit, red ripe, S. pimpinellifolium RIL-1121.75
S1037RIL-113fruit, red ripe, S. pimpinellifolium RIL-1131.78
S1038RIL-114fruit, red ripe, S. pimpinellifolium RIL-1140
S1039RIL-115fruit, red ripe, S. pimpinellifolium RIL-1152.64
S1040RIL-116fruit, red ripe, S. pimpinellifolium RIL-1162.84
S1041RIL-117fruit, red ripe, S. pimpinellifolium RIL-1170
S1042RIL-118fruit, red ripe, S. pimpinellifolium RIL-1182.21
S1043RIL-120fruit, red ripe, S. pimpinellifolium RIL-1204.68
S1044RIL-121fruit, red ripe, S. pimpinellifolium RIL-1210
S1045RIL-122fruit, red ripe, S. pimpinellifolium RIL-1222.35
S1046RIL-123fruit, red ripe, S. pimpinellifolium RIL-1231.67
S1047RIL-124fruit, red ripe, S. pimpinellifolium RIL-1242.72
S1048RIL-125fruit, red ripe, S. pimpinellifolium RIL-1252.31
S1049RIL-126fruit, red ripe, S. pimpinellifolium RIL-1262.76
S1050RIL-128fruit, red ripe, S. pimpinellifolium RIL-1281.66
S1051RIL-129fruit, red ripe, S. pimpinellifolium RIL-1291.49
S1052RIL-130fruit, red ripe, S. pimpinellifolium RIL-1300
S1053RIL-131fruit, red ripe, S. pimpinellifolium RIL-1310
S1054RIL-132fruit, red ripe, S. pimpinellifolium RIL-1320
S1055RIL-133fruit, red ripe, S. pimpinellifolium RIL-1334.06
S1056RIL-134fruit, red ripe, S. pimpinellifolium RIL-1340
S1057RIL-135fruit, red ripe, S. pimpinellifolium RIL-1353.16
S1058RIL-137fruit, red ripe, S. pimpinellifolium RIL-1370
S1059RIL-139fruit, red ripe, S. pimpinellifolium RIL-1390
S1060RIL-140fruit, red ripe, S. pimpinellifolium RIL-1403.93
S1061RIL-142fruit, red ripe, S. pimpinellifolium RIL-1425.07
S1062RIL-143fruit, red ripe, S. pimpinellifolium RIL-1433.99
S1063RIL-144fruit, red ripe, S. pimpinellifolium RIL-1445.43
S1064RIL-145fruit, red ripe, S. pimpinellifolium RIL-1452.62
S1065RIL-146fruit, red ripe, S. pimpinellifolium RIL-1460
S1066RIL-147fruit, red ripe, S. pimpinellifolium RIL-1472.76
S1067RIL-148fruit, red ripe, S. pimpinellifolium RIL-1480
S1068RIL-149fruit, red ripe, S. pimpinellifolium RIL-1494.86
S1069RIL-150fruit, red ripe, S. pimpinellifolium RIL-1503.44
S1070RIL-151fruit, red ripe, S. pimpinellifolium RIL-1511.4
S1071RIL-152fruit, red ripe, S. pimpinellifolium RIL-1520
S1072RIL-153fruit, red ripe, S. pimpinellifolium RIL-1537.84
S1073RIL-154fruit, red ripe, S. pimpinellifolium RIL-1540
S1074RIL-155fruit, red ripe, S. pimpinellifolium RIL-1551.82
S1075RIL-156fruit, red ripe, S. pimpinellifolium RIL-1565.4
S1076RIL-159fruit, red ripe, S. pimpinellifolium RIL-1590
S1077RIL-160fruit, red ripe, S. pimpinellifolium RIL-1600
S1078RIL-161fruit, red ripe, S. pimpinellifolium RIL-1614.75
S1079RIL-162fruit, red ripe, S. pimpinellifolium RIL-1629.34
S1080RIL-164fruit, red ripe, S. pimpinellifolium RIL-1640
S1081RIL-165fruit, red ripe, S. pimpinellifolium RIL-1650
S1082RIL-167fruit, red ripe, S. pimpinellifolium RIL-1676.4
S1083RIL-168fruit, red ripe, S. pimpinellifolium RIL-1680
S1084RIL-169fruit, red ripe, S. pimpinellifolium RIL-1693.06
S1085RIL-171fruit, red ripe, S. pimpinellifolium RIL-1710
S1086RIL-172fruit, red ripe, S. pimpinellifolium RIL-1723.58