Solyc11g066420 expression

Experiment: Transcriptome profiling of pennellii ILs
sample IDgenotype descriptionRPM
S0001M82fruit, red ripe, M820
S00021-1fruit, red ripe, S. pennellii IL1-10
S00031-1-2fruit, red ripe, S. pennellii IL1-1-20
S00041-1-3fruit, red ripe, S. pennellii IL1-1-30
S00051-2fruit, red ripe, S. pennellii IL1-20
S00061-3fruit, red ripe, S. pennellii IL1-30
S00071-4fruit, red ripe, S. pennellii IL1-40
S00081-4-18fruit, red ripe, S. pennellii IL1-4-180
S00092-1fruit, red ripe, S. pennellii IL2-10
S00102-1-1fruit, red ripe, S. pennellii IL2-1-10
S00112-2fruit, red ripe, S. pennellii IL2-20
S00122-3fruit, red ripe, S. pennellii IL2-30
S00132-4fruit, red ripe, S. pennellii IL2-40
S00142-5fruit, red ripe, S. pennellii IL2-50
S00152-6fruit, red ripe, S. pennellii IL2-60
S00162-6-5fruit, red ripe, S. pennellii IL2-6-50
S00173-1fruit, red ripe, S. pennellii IL3-10
S00183-2fruit, red ripe, S. pennellii IL3-20
S00203-4fruit, red ripe, S. pennellii IL3-40
S00213-5fruit, red ripe, S. pennellii IL3-50
S00224-1fruit, red ripe, S. pennellii IL4-10
S00234-1-1fruit, red ripe, S. pennellii IL4-1-10
S00244-2fruit, red ripe, S. pennellii IL4-20
S00254-3fruit, red ripe, S. pennellii IL4-30
S00264-3-2fruit, red ripe, S. pennellii IL4-3-20
S00274-4fruit, red ripe, S. pennellii IL4-40
S00285-1fruit, red ripe, S. pennellii IL5-10
S00295-2fruit, red ripe, S. pennellii IL5-20
S00305-3fruit, red ripe, S. pennellii IL5-30
S00315-4fruit, red ripe, S. pennellii IL5-40
S00325-5fruit, red ripe, S. pennellii IL5-50
S00346-2fruit, red ripe, S. pennellii IL6-20
S00356-2-2fruit, red ripe, S. pennellii IL6-2-20
S00366-3fruit, red ripe, S. pennellii IL6-30
S00376-4fruit, red ripe, S. pennellii IL6-40
S00387-1fruit, red ripe, S. pennellii IL7-10
S00397-2fruit, red ripe, S. pennellii IL7-20
S00407-3fruit, red ripe, S. pennellii IL7-30
S00417-4fruit, red ripe, S. pennellii IL7-40
S00427-4-1fruit, red ripe, S. pennellii IL7-4-10
S00437-5fruit, red ripe, S. pennellii IL7-50
S00447-5-5fruit, red ripe, S. pennellii IL7-5-50
S00458-1fruit, red ripe, S. pennellii IL8-10
S00468-1-1fruit, red ripe, S. pennellii IL8-1-10
S00478-1-5fruit, red ripe, S. pennellii IL8-1-50
S00488-2fruit, red ripe, S. pennellii IL8-20
S00498-2-1fruit, red ripe, S. pennellii IL8-2-10
S00508-3fruit, red ripe, S. pennellii IL8-30
S00518-3-1fruit, red ripe, S. pennellii IL8-3-10
S00529-1fruit, red ripe, S. pennellii IL9-10
S00539-1-2fruit, red ripe, S. pennellii IL9-1-20
S00549-1-3fruit, red ripe, S. pennellii IL9-1-30
S00559-2fruit, red ripe, S. pennellii IL9-20
S00569-2-5fruit, red ripe, S. pennellii IL9-2-50
S00579-2-6fruit, red ripe, S. pennellii IL9-2-60
S00589-3fruit, red ripe, S. pennellii IL9-30
S00599-3-1fruit, red ripe, S. pennellii IL9-3-10
S00609-3-2fruit, red ripe, S. pennellii IL9-3-20
S006110-1fruit, red ripe, S. pennellii IL10-10
S006210-1-1fruit, red ripe, S. pennellii IL10-1-10
S006310-2fruit, red ripe, S. pennellii IL10-20
S006410-2-2fruit, red ripe, S. pennellii IL10-2-20
S006510-3fruit, red ripe, S. pennellii IL10-30
S006611-1fruit, red ripe, S. pennellii IL11-10
S006711-2fruit, red ripe, S. pennellii IL11-20
S006811-3fruit, red ripe, S. pennellii IL11-30
S006911-4fruit, red ripe, S. pennellii IL11-40
S007011-4-1fruit, red ripe, S. pennellii IL11-4-10
S007112-1fruit, red ripe, S. pennellii IL12-10
S007212-1-1fruit, red ripe, S. pennellii IL12-1-10
S007312-2fruit, red ripe, S. pennellii IL12-20
S007412-3fruit, red ripe, S. pennellii IL12-30
S007512-3-1fruit, red ripe, S. pennellii IL12-3-10
S007612-4fruit, red ripe, S. pennellii IL12-40
S007712-4-1fruit, red ripe, S. pennellii IL12-4-10

Experiment: Transcriptome analysis of various tissues in tomato cultivar Heinz and the wild relative Solanum pimpinellifolium
sample IDgenotype descriptionRPM
S0584HeinzHeinz unopened flower buds0
S0585HeinzHeinz fully opened flowers0.05
S0586HeinzHeinz 1 cm fruits0.11
S0587HeinzHeinz 2 cm fruits0.35
S0588HeinzHeinz 3 cm fruits0.17
S0589HeinzHeinz mature green fruits0.41
S0590HeinzHeinz breaker fruits0.45
S0591HeinzHeinz breaker+10 fruits0.07
S0592HeinzHeinz roots6.03
S0593HeinzHeinz leaves0.05
S0594pimpinellifolium immature green fruits0
S0595pimpinellifolium breaker fruits0.04
S0596pimpinellifolium breaker+5 fruits0
S0597pimpinellifolium leaves0

Experiment: Transcriptome profiling of young flower buds of WT, sun, ovate and fs8.1 NILs in the LA1589 background
sample IDgenotype descriptionRPM
S0929LA1589LA1589 young flower buds at 4 days post-initiation of floral meristem0
S0930LA1589LA1589 young flower buds at 6 days post-initiation of floral meristem0
S0931LA1589LA1589 young flower buds at 8 days post-initiation of floral meristem0
S0932LA1589LA1589 young flower buds at 10 days post-initiation of floral meristem0
S0933LA1589LA1589 young flower buds at 13 days post-initiation of floral meristem0
S0934LA1589LA1589 young flower buds at 16 days post-initiation of floral meristem0
S0935sun NIL in the LA1589 backgroundsun young flower buds at 4 days post-initiation of floral meristem0
S0936sun NIL in the LA1589 backgroundsun young flower buds at 6 days post-initiation of floral meristem0
S0937sun NIL in the LA1589 backgroundsun young flower buds at 8 days post-initiation of floral meristem0
S0938sun NIL in the LA1589 backgroundsun young flower buds at 10 days post-initiation of floral meristem0
S0939sun NIL in the LA1589 backgroundsun young flower buds at 13 days post-initiation of floral meristem0
S0940sun NIL in the LA1589 backgroundsun young flower buds at 16 days post-initiation of floral meristem0
S0941ovate NIL in the LA1589 backgroundovate young flower buds at 4 days post-initiation of floral meristem0
S0942ovate NIL in the LA1589 backgroundovate young flower buds at 6 days post-initiation of floral meristem0
S0943ovate NIL in the LA1589 backgroundovate young flower buds at 8 days post-initiation of floral meristem0
S0944ovate NIL in the LA1589 backgroundovate young flower buds at 10 days post-initiation of floral meristem0
S0945ovate NIL in the LA1589 backgroundovate young flower buds at 13 days post-initiation of floral meristem0
S0946ovate NIL in the LA1589 backgroundovate young flower buds at 16 days post-initiation of floral meristem0
S0947fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 4 days post-initiation of floral meristem0
S0948fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 6 days post-initiation of floral meristem0.04
S0949fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 8 days post-initiation of floral meristem0
S0950fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 10 days post-initiation of floral meristem0
S0951fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 13 days post-initiation of floral meristem0
S0952fs8.1 NIL in the LA1589 backgroundfs8.1 young flower buds at 16 days post-initiation of floral meristem0

Experiment: Transcriptome analysis of various tissues in wild species S. pimpinellifolium, LA1589
sample IDgenotype descriptionRPM
S0608LA1589anthesis flowers (0DPA)0.01
S0609LA158910 days post anthesis fruit (10 DPA1)0.09
S0610LA158910 days post anthesis fruit 2 (10 DPA2)0.02
S0611LA158920 days post anthesis fruit (20DPA)0
S0612LA1589rippening fruit (33DPA)0
S0613LA1589cotyledons (COTYL)0.06
S0614LA1589hypocotyl (HYPO)0.02
S0615LA1589vegitative meristems (MERI)0
S0616LA1589mature leaves (ML)0.01
S0617LA1589whole root (ROOT)4.11
S0618LA1589young flower buds (YFB)0
S0619LA1589young leaves (YL)0

Experiment: Transcriptome sequencing of tomato leaves treated with different bacteria and PAMPs
sample IDgenotype descriptionRPM
S0620Rio Grande prf3 (deletion in Prf)mock PAMPs 30 min0
S0621Rio Grande prf3 (deletion in Prf)cold shock protein 22 (csp22) 30 min0
S0622Rio Grande prf3 (deletion in Prf)flagellin 22 (flg22) 30 min0
S0623Rio Grande prf3 (deletion in Prf)flagellin II-28 (flgII-28) 30 min0
S0624Rio Grande prf3 (deletion in Prf)Lipopolysaccharides (LPS) 30 min0
S0625Rio Grande prf3 (deletion in Prf)Peptidoglycan (PGN) 30 min0
S0626Rio Grande prf3 (deletion in Prf)mock PAMPs 6h0.05
S0627Rio Grande prf3 (deletion in Prf)cold shock protein 22 (csp22) 6 h0.32
S0628Rio Grande prf3 (deletion in Prf)flagellin 22 (flg22) 6h0.06
S0629Rio Grande prf3 (deletion in Prf)flagellin II-28 (flgII-28) 6h0.17
S0630Rio Grande prf3 (deletion in Prf)Lipopolysaccharides (LPS) 6 h0.29
S0631Rio Grande prf3 (deletion in Prf)Peptidoglycan (PGN) 6h 0.22
S0632Rio Grande prf3 (deletion in Prf)mock bacteria 30 min0
S0633Rio Grande prf3 (deletion in Prf)DC3000 30 min0
S0634Rio Grande prf3 (deletion in Prf)DC3000ΔhrcQ-U 30 min0.02
S0635Rio Grande prf3 (deletion in Prf)DC3000ΔhrcQ-UΔfliC 30 min0.03
S0636Rio Grande prf3 (deletion in Prf)DC3000Δ28 30 min0
S0637Rio Grande prf3 (deletion in Prf)DC3000ΔAvrPtoΔAvrPtoB 30 min0
S0638Rio Grande prf3 (deletion in Prf)Pseudomonas fluorescens 30 min0.04
S0639Rio Grande prf3 (deletion in Prf)Pseudomonas putida 30 min0
S0640Rio Grande prf3 (deletion in Prf)Agrobacterium tumefaciens 30 min0
S0641Rio Grande prf3 (deletion in Prf)mock bacteria 6 h0
S0642Rio Grande prf3 (deletion in Prf)DC3000 6 h0.13
S0643Rio Grande prf3 (deletion in Prf)DC3000ΔhrcQ-U 6 h0.07
S0644Rio Grande prf3 (deletion in Prf)DC3000ΔhrcQ-UΔfliC 6 h0.16
S0645Rio Grande prf3 (deletion in Prf)DC3000Δ28 6 h0.51
S0646Rio Grande prf3 (deletion in Prf)DC3000ΔAvrPtoΔAvrPtoB 6 h0.23
S0647Rio Grande prf3 (deletion in Prf)Pseudomonas fluorescens 6 h0.45
S0648Rio Grande prf3 (deletion in Prf)Pseudomonas putida 6 h0.31
S0649Rio Grande prf3 (deletion in Prf)Agrobacterium tumefaciens 6 h0.12

Experiment: Transcriptome or gene expression of various fruit tissue in FW3.2 NILs
sample IDgenotype descriptionRPM
S0671Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 5 Days Post Anthesis Pericarp0.01
S0672Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 5 Days Post Anthesis Pericarp0
S0673Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 7 Days Post Anthesis Pericarp0
S0674Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 7 Days Post Anthesis Pericarp0
S0675Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 10 Days Post Anthesis Pericarp0.01
S0676Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 10 Days Post Anthesis Pericarp0.01
S0677Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 5 Days Post Anthesis Seed0
S0678Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 5 Days Post Anthesis Seed0.01
S0679Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 7 Days Post Anthesis Seed0.01
S0680Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 7 Days Post Anthesis Seed0
S0681Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) 10 Days Post Anthesis Seed0.01
S0682Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) 10 Days Post Anthesis Seed0
S0683Yellow Stuffer (cultivated allele of fw3.2)fw3.2(ys) young flower bud0.13
S0684Yellow Stuffer (wild allele of fw3.2)fw3.2(wt) young flower bud0.11

Experiment: Tissue-specific transcriptome profiling of Solanum pimpinellifolium ovaries and fruit using LCM-coupled to RNA-seq
sample IDgenotype descriptionRPM
S0685LA1589LA1589, Ovule 0 dpa (SA1_D0_OV)0.12
S0686sunsun, Ovule 0 dpa (SA2_D0_OV)0.28
S0687LA1589LA1589, Placenta 0 dpa (SA1_D0_PL)0.45
S0688sunsun, Placenta 0 dpa (SA2_D0_PL)0.35
S0689LA1589LA1589, Septum 0 dpa (SA1_D0_SE)0.13
S0690sunsun, Septum 0 dpa (SA2_D0_SE)0.02
S0691LA1589LA1589, Pericarp 0 dpa (SA1_D0_PE)0
S0692sunsun, Pericarp 0 dpa (SA2_D0_PE)0.08
S0693LA1589LA1589, Embryo 4 dpa Fruit (SA1_D4_EM)0.15
S0694sunsun, Embryo 4 dpa Fruit (SA2_D4_EM)0.19
S0695LA1589LA1589, Endosperm 4 dpa Fruit (SA1_D4_ENDO)0.03
S0696sunsun, Endosperm 4 dpa Fruit (SA2_D4_ENDO)0.09
S0697LA1589LA1589, Seed Coat 4 dpa Fruit (SA1_D4_SC)0.32
S0698sunsun, Seed Coat 4 dpa Fruit (SA2_D4_SC)0.13
S0699LA1589LA1589, Funiculus 4 dpa Fruit (SA1_D4_FU)0.17
S0700sunsun, Funiculus 4 dpa Fruit (SA2_D4_FU)0.7
S0701LA1589LA1589, Placenta 4 dpa Fruit (SA1_D4_PL)0.01
S0702sunsun, Placenta 4 dpa Fruit (SA2_D4_PL)0.41
S0703LA1589LA1589, Septum 4 dpa Fruit (SA1_D4_SE)0.22
S0704sunsun, Septum 4 dpa Fruit (SA2_D4_SE)0.18
S0705LA1589LA1589, Pericarp 4 dpa Fruit (SA1_D4_PE)0.13
S0706sunsun, Pericarp 4 dpa Fruit (SA2_D4_PE)0.48

Experiment: Transcriptome sequencing of leaves of resistant (RG-PtoR) and susceptible (RG-prf3 and RG-prf19) tomato plants treated with Pst DC3000
sample IDgenotype descriptionRPM
S0740Rio Grande-PtoRDC3000 4 h0
S0741Rio Grande-prf3DC3000 4 h0.12
S0742Rio Grande-prf19DC3000 4 h0
S0743Rio Grande-PtoRDC3000 6 h0.02
S0744Rio Grande-prf3DC3000 6 h0.02
S0745Rio Grande-prf19DC3000 6 h0

Experiment: Transcriptome sequencing of tomato leaves trated with diferent Pst DC3000 mutant strains
sample IDgenotype descriptionRPM
S0746Rio Grande-PtoRDC3000ΔhopQ1-1 ΔfliC 6 h0.13
S0747Rio Grande-PtoRDC3000ΔhopQ1-1 ΔavrPto ΔavrPtoB 6 h0.05
S0748Rio Grande-PtoRDC3000ΔhopQ1-1 ΔavrPto ΔavrPtoB ΔfliC 6 h0

Experiment: Transcriptome profiling of anthesis-stage ovaries from the fs8.1 backcrossed lines in Rio Grande background
sample IDgenotype descriptionRPM
S0749fs8.1, backcrossed line 09S204, BC4F2, Rio Grande background09S204-ee, ovary(anthesis)0.06
S0750WT, backcrossed line 09S204, BC4F2, Rio Grande background09S204-pp, ovary(anthesis)0
S0751fs8.1, backcrossed line 09S236, BC3F2, Rio Grande background09S236-ee, ovary(anthesis)0
S0752WT, backcrossed line 09S236, BC3F2, Rio Grande background09S236-pp, ovary(anthesis)0
S0753fs8.1, backcrossed line 09S237, BC1F4, Rio Grande background09S237-ee, ovary(anthesis)0.05
S0754WT, backcrossed line 09S237, BC1F4, Rio Grande background09S237-pp, ovary(anthesis)0

Experiment: Domain-wise effect of AvrPto on the tomato transcriptome 6 hours post inoculation
sample IDgenotype descriptionRPM
S0755Rio Grande-prf3D28E (pCPP45::avrPto) 6 h0.35
S0756Rio Grande-prf3D28E (pCPP45::avrPto I96A) 6 h0.28
S0757Rio Grande-prf3D28E (pCPP45::avrPto 2xA) 6 h0.23
S0758Rio Grande-prf3D28E (pCPP45::avrPto I96A + 2xA) 6 h0.18
S0759Rio Grande-prf3Mock 6 h0.08

Experiment: Transcriptome sequencing of Pti1 silenced plants after treatment of Pst DC3000ΔAvrPtoΔAvrPtoB
sample IDgenotype descriptionRPM
S0658Rio Grande prf3 (deletion in Prf)Azygous of hpPti1 DC3000ΔAvrPtoΔAvrPtoB 3 h0
S0659Rio Grande prf3 (deletion in Prf)hpPti1-F10 DC3000ΔAvrPtoΔAvrPtoB 3 h 0.12
S0660Rio Grande prf3 (deletion in Prf)hpPti1-F27 DC3000ΔAvrPtoΔAvrPtoB 3 h0.09
S0661Rio Grande prf3 (deletion in Prf)Azygous of hpPti1 DC3000ΔAvrPtoΔAvrPtoB 6 h0.13
S0662Rio Grande prf3 (deletion in Prf), hairpin Pti1, line F10hpPti1-F10 DC3000ΔAvrPtoΔAvrPtoB 6 h0.09
S0663Rio Grande prf3 (deletion in Prf), hairpin Pti1, line F27hpPti1-F27 ΔAvrPtoΔAvrPtoB 6 h0.03

Experiment: Gene expression in IM/FM, 2 dpi, 4 dpi and 6 dpi floral buds of wild type, lc, fas and lc/fas in the LA1589 background
sample IDgenotype descriptionRPM
S1087LA15892dpi floral buds0
S1088lc2dpi floral buds0.23
S1089fas2dpi floral buds0.33
S1090lc/fas2dpi floral buds0
S1091LA15894dpi floral buds0
S1092lc4dpi floral buds0
S1093fas4dpi floral buds0
S1094lc/fas4dpi floral buds0
S1095LA15896dpi floral buds0
S1096lc6dpi floral buds0
S1097fas6dpi floral buds0
S1098lc/fas6dpi floral buds0
S1099LA1589floral and inflorescence meristem0
S1100lcfloral and inflorescence meristem0
S1101fasfloral and inflorescence meristem0
S1102lc/fasfloral and inflorescence meristem0
S1103LA1589sympodial shoot apical meristem0
S1104lcsympodial shoot apical meristem0
S1105fassympodial shoot apical meristem0
S1106lc/fassympodial shoot apical meristem0.27

Experiment: RNA-Seq analysis on tomato anthesis flowers of ovate/sov1 NILs in the LA1589 background
sample IDgenotype descriptionRPM
S0764LA1589LA1589, flowers0
S0765ovateovate, flowers0
S0766sov1sov1, flowers0
S0767ovate/sov1ovate/sov1, flowers0.03

Experiment: Transcriptome profiling of three fruit tissues from the fw11.3 NILs in cultivated background
sample IDgenotype descriptionRPM
S0768Rio Grande (fw11.3-D)fw11.3-D Pericarp, 10 Days Post Anthesis0.03
S0769Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 10 Days Post Anthesis0.03
S0770Rio Grande (fw11.3-D)fw11.3-D Columella, 10 Days Post Anthesis0.04
S0771Rio Grande (fw11.3-D)fw11.3-D Pericarp, 15 Days Post Anthesis0.03
S0772Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 15 Days Post Anthesis0.07
S0773Rio Grande (fw11.3-D)fw11.3-D Columella, 15 Days Post Anthesis0.21
S0774Rio Grande (fw11.3-D)fw11.3-D Pericarp, 25 Days Post Anthesis0.16
S0775Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 25 Days Post Anthesis0.03
S0776Rio Grande (fw11.3-D)fw11.3-D Columella, 25 Days Post Anthesis0.28
S0777Rio Grande (fw11.3-D)fw11.3-D Pericarp, 33 Days Post Anthesis0.11
S0778Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 33 Days Post Anthesis0.07
S0779Rio Grande (fw11.3-D)fw11.3-D Columella, 33 Days Post Anthesis0.15
S0780Rio Grande (fw11.3-D)fw11.3-D Pericarp, 4 Days Post Anthesis0.02
S0781Rio Grande (fw11.3-D)fw11.3-D Septum, Placenta and Columella, 4 Days Post Anthesis0
S0782Rio Grande (fw11.3-D)fw11.3-D Pericarp, 7 Days Post Anthesis0.05
S0783Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, 7 Days Post Anthesis0.06
S0784Rio Grande (fw11.3-D)fw11.3-D Columella, 7 Days Post Anthesis0.05
S0785Rio Grande (fw11.3-D)fw11.3-D Pericarp, Turning0.4
S0786Rio Grande (fw11.3-D)fw11.3-D Septum and Placenta, Turning0
S0787Rio Grande (fw11.3-D)fw11.3-D Columella, Turning0.15
S0788Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 10 Days Post Anthesis0.06
S0789Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 10 Days Post Anthesis0.04
S0790Rio Grande (fw11.3-WT)fw11.3-WT Columella, 10 Days Post Anthesis0.05
S0791Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 15 Days Post Anthesis0.14
S0792Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 15 Days Post Anthesis0.06
S0793Rio Grande (fw11.3-WT)fw11.3-WT Columella, 15 Days Post Anthesis0.14
S0794Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 25 Days Post Anthesis0.13
S0795Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 25 Days Post Anthesis0.03
S0796Rio Grande (fw11.3-WT)fw11.3-WT Columella, 25 Days Post Anthesis0.31
S0797Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 33 Days Post Anthesis0.46
S0798Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 33 Days Post Anthesis0
S0799Rio Grande (fw11.3-WT)fw11.3-WT Columella, 33 Days Post Anthesis0
S0800Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 4 Days Post Anthesis0
S0801Rio Grande (fw11.3-WT)fw11.3-WT Septum, Placenta and Columella, 4 Days Post Anthesis0.04
S0802Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, 7 Days Post Anthesis0.02
S0803Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, 7 Days Post Anthesis0.02
S0804Rio Grande (fw11.3-WT)fw11.3-WT Columella, 7 Days Post Anthesis0.05
S0805Rio Grande (fw11.3-WT)fw11.3-WT Pericarp, Turning0
S0806Rio Grande (fw11.3-WT)fw11.3-WT Septum and Placenta, Turning0.04
S0807Rio Grande (fw11.3-WT)fw11.3-WT Columella, Turning0.26

Experiment: Transcriptome profiling of three fruit tissues from the sun NILs in cultivated background
sample IDgenotype descriptionRPM
S0808Sun1642 (sun-WT)SA3 Pericarp and exocarp, 4 Days Post Anthesis0
S0809Sun1642 (sun-WT)SA3 Septum and seeds, 4 Days Post Anthesis0
S0810Sun1642 (sun-WT)SA3 Pericarp, 7 Days Post Anthesis0
S0811Sun1642 (sun-WT)SA3 Septum, 7 Days Post Anthesis0
S0812Sun1642 (sun-WT)SA3 Seeds, 7 Days Post Anthesis0
S0813Sun1642 (sun-WT)SA3 Pericarp, 10 Days Post Anthesis0.01
S0814Sun1642 (sun-WT)SA3 Septum, 10 Days Post Anthesis0.01
S0815Sun1642 (sun-WT)SA3 Seeds, 10 Days Post Anthesis0
S0816Sun1642 (sun-D)SA4 Pericarp and exocarp, 4 Days Post Anthesis0
S0817Sun1642 (sun-D)SA4 Septum and seeds, 4 Days Post Anthesis0
S0818Sun1642 (sun-D)SA4 Pericarp, 7 Days Post Anthesis0
S0819Sun1642 (sun-D)SA4 Septum, 7 Days Post Anthesis0
S0820Sun1642 (sun-D)SA4 Seeds, 7 Days Post Anthesis0
S0821Sun1642 (sun-D)SA4 Pericarp, 10 Days Post Anthesis0
S0822Sun1642 (sun-D)SA4 Septum, 10 Days Post Anthesis0
S0823Sun1642 (sun-D)SA4 Seeds, 10 Days Post Anthesis0

Experiment: Transcriptome profiling of ripe fruits of S. lycopersicoides ILs
sample IDgenotype descriptionRPM
S0824VF36fruit, red ripe, VF360.45
S0825LA3882fruit, red ripe, S. lycopersicoides IL LA38820.68
S0826LA3886fruit, red ripe, S. lycopersicoides IL LA38860.51
S0827LA3892fruit, red ripe, S. lycopersicoides IL LA38920.56
S0828LA4230fruit, red ripe, S. lycopersicoides IL LA42300
S0829LA4231fruit, red ripe, S. lycopersicoides IL LA42310.42
S0830LA4232fruit, red ripe, S. lycopersicoides IL LA42320.2
S0831LA4233fruit, red ripe, S. lycopersicoides IL LA42330.54
S0832LA4234Afruit, red ripe, S. lycopersicoides IL LA4234A0.18
S0833LA4234Bfruit, red ripe, S. lycopersicoides IL LA4234B0.18
S0834LA4235fruit, red ripe, S. lycopersicoides IL LA42350.72
S0835LA4236Afruit, red ripe, S. lycopersicoides IL LA4236A0.34
S0836LA4237fruit, red ripe, S. lycopersicoides IL LA42370.12
S0837LA4238fruit, red ripe, S. lycopersicoides IL LA42380.11
S0838LA4239fruit, red ripe, S. lycopersicoides IL LA42390
S0839LA4241Afruit, red ripe, S. lycopersicoides IL LA4241A0.13
S0840LA4241Bfruit, red ripe, S. lycopersicoides IL LA4241B0.17
S0841LA4242Afruit, red ripe, S. lycopersicoides IL LA4242A0.06
S0842LA4242Bfruit, red ripe, S. lycopersicoides IL LA4242B0
S0843LA4242Cfruit, red ripe, S. lycopersicoides IL LA4242C0.3
S0844LA4243fruit, red ripe, S. lycopersicoides IL LA42430.47
S0845LA4244fruit, red ripe, S. lycopersicoides IL LA42440.11
S0846LA4245fruit, red ripe, S. lycopersicoides IL LA42450.43
S0847LA4247fruit, red ripe, S. lycopersicoides IL LA42470.22
S0848LA4248fruit, red ripe, S. lycopersicoides IL LA42480.18
S0849LA4249Afruit, red ripe, S. lycopersicoides IL LA4249A0.04
S0850LA4249Bfruit, red ripe, S. lycopersicoides IL LA4249B0.19
S0851LA4250Afruit, red ripe, S. lycopersicoides IL LA4250A0.09
S0852LA4250Bfruit, red ripe, S. lycopersicoides IL LA4250B0.17
S0853LA4250Cfruit, red ripe, S. lycopersicoides IL LA4250C0.29
S0854LA4251fruit, red ripe, S. lycopersicoides IL LA42510.15
S0855LA4252Afruit, red ripe, S. lycopersicoides IL LA4252A0.3
S0856LA4252Bfruit, red ripe, S. lycopersicoides IL LA4252B0.21
S0857LA4252Cfruit, red ripe, S. lycopersicoides IL LA4252C0.17
S0858LA4252Efruit, red ripe, S. lycopersicoides IL LA4252E1.04
S0859LA4252Ffruit, red ripe, S. lycopersicoides IL LA4252F0.35
S0860LA4253fruit, red ripe, S. lycopersicoides IL LA42530.32
S0861LA4254fruit, red ripe, S. lycopersicoides IL LA42540
S0862LA4255fruit, red ripe, S. lycopersicoides IL LA42550.29
S0863LA4256fruit, red ripe, S. lycopersicoides IL LA42560.15
S0864LA4257fruit, red ripe, S. lycopersicoides IL LA42570.32
S0865LA4258fruit, red ripe, S. lycopersicoides IL LA42580.86
S0866LA4260fruit, red ripe, S. lycopersicoides IL LA42600
S0867LA4262Afruit, red ripe, S. lycopersicoides IL LA4262A1.14
S0868LA4262Bfruit, red ripe, S. lycopersicoides IL LA4262B0.31
S0869LA4263Afruit, red ripe, S. lycopersicoides IL LA4263A0.1
S0870LA4263Bfruit, red ripe, S. lycopersicoides IL LA4263B0.08
S0871LA4263Cfruit, red ripe, S. lycopersicoides IL LA4263C0.32
S0872LA4263Dfruit, red ripe, S. lycopersicoides IL LA4263D0
S0873LA4264Afruit, red ripe, S. lycopersicoides IL LA4264A0
S0874LA4264Bfruit, red ripe, S. lycopersicoides IL LA4264B0.17
S0875LA4266Afruit, red ripe, S. lycopersicoides IL LA4266A0.06
S0876LA4266Bfruit, red ripe, S. lycopersicoides IL LA4266B0.41
S0877LA4268fruit, red ripe, S. lycopersicoides IL LA42680.11
S0878LA4269fruit, red ripe, S. lycopersicoides IL LA42690.37
S0879LA4270Afruit, red ripe, S. lycopersicoides IL LA4270A0.13
S0880LA4270Bfruit, red ripe, S. lycopersicoides IL LA4270B0.16
S0881LA4272fruit, red ripe, S. lycopersicoides IL LA42720.17
S0882LA4273fruit, red ripe, S. lycopersicoides IL LA42730.44
S0883LA4274fruit, red ripe, S. lycopersicoides IL LA42740.46
S0884LA4275fruit, red ripe, S. lycopersicoides IL LA42750.49
S0885LA4276Afruit, red ripe, S. lycopersicoides IL LA4276A0.75
S0886LA4276Bfruit, red ripe, S. lycopersicoides IL LA4276B0.63
S0887LA4276Cfruit, red ripe, S. lycopersicoides IL LA4276C0.34
S0888LA4276Dfruit, red ripe, S. lycopersicoides IL LA4276D0.5
S0889LA4277fruit, red ripe, S. lycopersicoides IL LA42770.21
S0890LA4277Bfruit, red ripe, S. lycopersicoides IL LA4277B0.37
S0891LA4277Cfruit, red ripe, S. lycopersicoides IL LA4277C0.16
S0892LA4278Afruit, red ripe, S. lycopersicoides IL LA4278A0.97
S0893LA4278Bfruit, red ripe, S. lycopersicoides IL LA4278B0.74
S0894LA4279fruit, red ripe, S. lycopersicoides IL LA42790
S0895LA4280fruit, red ripe, S. lycopersicoides IL LA42800.3
S0896LA4281Afruit, red ripe, S. lycopersicoides IL LA4281A0.12
S0897LA4281Bfruit, red ripe, S. lycopersicoides IL LA4281B0.44
S0898LA4281Cfruit, red ripe, S. lycopersicoides IL LA4281C0.37
S0899LA4281Dfruit, red ripe, S. lycopersicoides IL LA4281D0.23
S0900LA4281Efruit, red ripe, S. lycopersicoides IL LA4281E0.15
S0901LA4282Afruit, red ripe, S. lycopersicoides IL LA4282A0.05
S0902LA4282Bfruit, red ripe, S. lycopersicoides IL LA4282B0.07
S0903LA4282Cfruit, red ripe, S. lycopersicoides IL LA4282C0.19
S0904LA4284fruit, red ripe, S. lycopersicoides IL LA42840.1
S0905LA4294Afruit, red ripe, S. lycopersicoides IL LA4294A0.19
S0906LA4294Bfruit, red ripe, S. lycopersicoides IL LA4294B0
S0907LA4295fruit, red ripe, S. lycopersicoides IL LA42950
S0908LA4296fruit, red ripe, S. lycopersicoides IL LA42960.1
S0909LA4297fruit, red ripe, S. lycopersicoides IL LA42970
S0910LA4298fruit, red ripe, S. lycopersicoides IL LA42980.07
S0911LA4299fruit, red ripe, S. lycopersicoides IL LA42990.44
S0912LA4300Afruit, red ripe, S. lycopersicoides IL LA4300A0.3
S0913LA4300Bfruit, red ripe, S. lycopersicoides IL LA4300B0
S0914LA4301Afruit, red ripe, S. lycopersicoides IL LA4301A0.17
S0915LA4303fruit, red ripe, S. lycopersicoides IL LA43030.34
S0916LA4305fruit, red ripe, S. lycopersicoides IL LA43050.21
S0917LA4306Afruit, red ripe, S. lycopersicoides IL LA4306A0
S0918LA4306Bfruit, red ripe, S. lycopersicoides IL LA4306B0
S0919LA4307fruit, red ripe, S. lycopersicoides IL LA43070.09
S0920LA4308fruit, red ripe, S. lycopersicoides IL LA43080.2
S0921LA4308Afruit, red ripe, S. lycopersicoides IL LA4308A0.39
S0922LA4309fruit, red ripe, S. lycopersicoides IL LA43090.54
S0923LA4310fruit, red ripe, S. lycopersicoides IL LA43100.11
S0924LA4311fruit, red ripe, S. lycopersicoides IL LA43110
S0925LA4312Afruit, red ripe, S. lycopersicoides IL LA4312A0.36
S0926LA4312Bfruit, red ripe, S. lycopersicoides IL LA4312B0.15
S0927LA4313Afruit, red ripe, S. lycopersicoides IL LA4313A0.12
S0928LA4313Bfruit, red ripe, S. lycopersicoides IL LA4313B0.47

Experiment: Transcriptome profiling of ripe fruits of S. pimpinellifolium RILs
sample IDgenotype descriptionRPM
S0953LA2093fruit, red ripe, S. pimpinellifolium LA20930
S0954NCEBR1fruit, red ripe, S. lycopersicum NCEBR10.14
S0955RIL-1fruit, red ripe, S. pimpinellifolium RIL-10
S0956RIL-3fruit, red ripe, S. pimpinellifolium RIL-30.37
S0957RIL-4fruit, red ripe, S. pimpinellifolium RIL-40
S0958RIL-5fruit, red ripe, S. pimpinellifolium RIL-50.25
S0959RIL-6fruit, red ripe, S. pimpinellifolium RIL-60
S0960RIL-7fruit, red ripe, S. pimpinellifolium RIL-70
S0961RIL-11fruit, red ripe, S. pimpinellifolium RIL-110.04
S0962RIL-12fruit, red ripe, S. pimpinellifolium RIL-120.11
S0963RIL-13fruit, red ripe, S. pimpinellifolium RIL-130.2
S0964RIL-14fruit, red ripe, S. pimpinellifolium RIL-140
S0965RIL-16fruit, red ripe, S. pimpinellifolium RIL-160.67
S0966RIL-18fruit, red ripe, S. pimpinellifolium RIL-180.48
S0967RIL-19fruit, red ripe, S. pimpinellifolium RIL-190.16
S0968RIL-20fruit, red ripe, S. pimpinellifolium RIL-200
S0969RIL-21fruit, red ripe, S. pimpinellifolium RIL-210
S0970RIL-22fruit, red ripe, S. pimpinellifolium RIL-220.08
S0971RIL-23fruit, red ripe, S. pimpinellifolium RIL-230
S0972RIL-24fruit, red ripe, S. pimpinellifolium RIL-240.04
S0973RIL-25fruit, red ripe, S. pimpinellifolium RIL-250.08
S0974RIL-26fruit, red ripe, S. pimpinellifolium RIL-260
S0975RIL-27fruit, red ripe, S. pimpinellifolium RIL-270.12
S0976RIL-28fruit, red ripe, S. pimpinellifolium RIL-280.22
S0977RIL-30fruit, red ripe, S. pimpinellifolium RIL-300
S0978RIL-31fruit, red ripe, S. pimpinellifolium RIL-310
S0979RIL-32fruit, red ripe, S. pimpinellifolium RIL-320
S0980RIL-33fruit, red ripe, S. pimpinellifolium RIL-330
S0981RIL-34fruit, red ripe, S. pimpinellifolium RIL-340.5
S0982RIL-35fruit, red ripe, S. pimpinellifolium RIL-350
S0983RIL-37fruit, red ripe, S. pimpinellifolium RIL-370
S0984RIL-38fruit, red ripe, S. pimpinellifolium RIL-380
S0985RIL-39fruit, red ripe, S. pimpinellifolium RIL-390
S0986RIL-41fruit, red ripe, S. pimpinellifolium RIL-410
S0987RIL-43fruit, red ripe, S. pimpinellifolium RIL-430
S0988RIL-45fruit, red ripe, S. pimpinellifolium RIL-450.04
S0989RIL-47fruit, red ripe, S. pimpinellifolium RIL-470
S0990RIL-48fruit, red ripe, S. pimpinellifolium RIL-480.14
S0991RIL-49fruit, red ripe, S. pimpinellifolium RIL-490
S0992RIL-50fruit, red ripe, S. pimpinellifolium RIL-500
S0993RIL-52fruit, red ripe, S. pimpinellifolium RIL-520.05
S0994RIL-53fruit, red ripe, S. pimpinellifolium RIL-530.17
S0995RIL-54fruit, red ripe, S. pimpinellifolium RIL-540
S0996RIL-55fruit, red ripe, S. pimpinellifolium RIL-550.04
S0997RIL-56fruit, red ripe, S. pimpinellifolium RIL-560
S0998RIL-57fruit, red ripe, S. pimpinellifolium RIL-570.16
S0999RIL-58fruit, red ripe, S. pimpinellifolium RIL-580.05
S1000RIL-62fruit, red ripe, S. pimpinellifolium RIL-620
S1001RIL-63fruit, red ripe, S. pimpinellifolium RIL-630
S1002RIL-65fruit, red ripe, S. pimpinellifolium RIL-650
S1003RIL-66fruit, red ripe, S. pimpinellifolium RIL-660
S1004RIL-67fruit, red ripe, S. pimpinellifolium RIL-670.1
S1005RIL-68fruit, red ripe, S. pimpinellifolium RIL-680
S1006RIL-69fruit, red ripe, S. pimpinellifolium RIL-690
S1007RIL-71fruit, red ripe, S. pimpinellifolium RIL-710.08
S1008RIL-72fruit, red ripe, S. pimpinellifolium RIL-720.07
S1009RIL-73fruit, red ripe, S. pimpinellifolium RIL-730.06
S1010RIL-75fruit, red ripe, S. pimpinellifolium RIL-750.15
S1011RIL-76fruit, red ripe, S. pimpinellifolium RIL-760
S1012RIL-77fruit, red ripe, S. pimpinellifolium RIL-770.11
S1013RIL-78fruit, red ripe, S. pimpinellifolium RIL-780
S1014RIL-79fruit, red ripe, S. pimpinellifolium RIL-790.1
S1015RIL-80fruit, red ripe, S. pimpinellifolium RIL-800.91
S1016RIL-81fruit, red ripe, S. pimpinellifolium RIL-810
S1017RIL-84fruit, red ripe, S. pimpinellifolium RIL-840.05
S1018RIL-85fruit, red ripe, S. pimpinellifolium RIL-850.09
S1019RIL-88fruit, red ripe, S. pimpinellifolium RIL-880.21
S1020RIL-90fruit, red ripe, S. pimpinellifolium RIL-900.04
S1021RIL-91fruit, red ripe, S. pimpinellifolium RIL-910
S1022RIL-95fruit, red ripe, S. pimpinellifolium RIL-950
S1023RIL-96fruit, red ripe, S. pimpinellifolium RIL-960.09
S1024RIL-97fruit, red ripe, S. pimpinellifolium RIL-970
S1025RIL-98fruit, red ripe, S. pimpinellifolium RIL-980
S1026RIL-99fruit, red ripe, S. pimpinellifolium RIL-990
S1027RIL-100fruit, red ripe, S. pimpinellifolium RIL-1000
S1028RIL-101fruit, red ripe, S. pimpinellifolium RIL-1010
S1029RIL-102fruit, red ripe, S. pimpinellifolium RIL-1020
S1030RIL-103fruit, red ripe, S. pimpinellifolium RIL-1030.03
S1031RIL-105fruit, red ripe, S. pimpinellifolium RIL-1050.06
S1032RIL-107fruit, red ripe, S. pimpinellifolium RIL-1070
S1033RIL-108fruit, red ripe, S. pimpinellifolium RIL-1080.18
S1034RIL-109fruit, red ripe, S. pimpinellifolium RIL-1090
S1035RIL-111fruit, red ripe, S. pimpinellifolium RIL-1110.2
S1036RIL-112fruit, red ripe, S. pimpinellifolium RIL-1120.04
S1037RIL-113fruit, red ripe, S. pimpinellifolium RIL-1130.1
S1038RIL-114fruit, red ripe, S. pimpinellifolium RIL-1140.13
S1039RIL-115fruit, red ripe, S. pimpinellifolium RIL-1150.13
S1040RIL-116fruit, red ripe, S. pimpinellifolium RIL-1160
S1041RIL-117fruit, red ripe, S. pimpinellifolium RIL-1170
S1042RIL-118fruit, red ripe, S. pimpinellifolium RIL-1180.06
S1043RIL-120fruit, red ripe, S. pimpinellifolium RIL-1200
S1044RIL-121fruit, red ripe, S. pimpinellifolium RIL-1210
S1045RIL-122fruit, red ripe, S. pimpinellifolium RIL-1220
S1046RIL-123fruit, red ripe, S. pimpinellifolium RIL-1230
S1047RIL-124fruit, red ripe, S. pimpinellifolium RIL-1240
S1048RIL-125fruit, red ripe, S. pimpinellifolium RIL-1250
S1049RIL-126fruit, red ripe, S. pimpinellifolium RIL-1260
S1050RIL-128fruit, red ripe, S. pimpinellifolium RIL-1280.06
S1051RIL-129fruit, red ripe, S. pimpinellifolium RIL-1290
S1052RIL-130fruit, red ripe, S. pimpinellifolium RIL-1300
S1053RIL-131fruit, red ripe, S. pimpinellifolium RIL-1310.05
S1054RIL-132fruit, red ripe, S. pimpinellifolium RIL-1320
S1055RIL-133fruit, red ripe, S. pimpinellifolium RIL-1330.23
S1056RIL-134fruit, red ripe, S. pimpinellifolium RIL-1341.5
S1057RIL-135fruit, red ripe, S. pimpinellifolium RIL-1350.11
S1058RIL-137fruit, red ripe, S. pimpinellifolium RIL-1370.14
S1059RIL-139fruit, red ripe, S. pimpinellifolium RIL-1390.09
S1060RIL-140fruit, red ripe, S. pimpinellifolium RIL-1400
S1061RIL-142fruit, red ripe, S. pimpinellifolium RIL-1420
S1062RIL-143fruit, red ripe, S. pimpinellifolium RIL-1430.23
S1063RIL-144fruit, red ripe, S. pimpinellifolium RIL-1440.09
S1064RIL-145fruit, red ripe, S. pimpinellifolium RIL-1450
S1065RIL-146fruit, red ripe, S. pimpinellifolium RIL-1460
S1066RIL-147fruit, red ripe, S. pimpinellifolium RIL-1470
S1067RIL-148fruit, red ripe, S. pimpinellifolium RIL-1481.29
S1068RIL-149fruit, red ripe, S. pimpinellifolium RIL-1490.9
S1069RIL-150fruit, red ripe, S. pimpinellifolium RIL-1500
S1070RIL-151fruit, red ripe, S. pimpinellifolium RIL-1510
S1071RIL-152fruit, red ripe, S. pimpinellifolium RIL-1520.04
S1072RIL-153fruit, red ripe, S. pimpinellifolium RIL-1530
S1073RIL-154fruit, red ripe, S. pimpinellifolium RIL-1540.06
S1074RIL-155fruit, red ripe, S. pimpinellifolium RIL-1550.07
S1075RIL-156fruit, red ripe, S. pimpinellifolium RIL-1560
S1076RIL-159fruit, red ripe, S. pimpinellifolium RIL-1590
S1077RIL-160fruit, red ripe, S. pimpinellifolium RIL-1600.12
S1078RIL-161fruit, red ripe, S. pimpinellifolium RIL-1610.26
S1079RIL-162fruit, red ripe, S. pimpinellifolium RIL-1620.06
S1080RIL-164fruit, red ripe, S. pimpinellifolium RIL-1640
S1081RIL-165fruit, red ripe, S. pimpinellifolium RIL-1650
S1082RIL-167fruit, red ripe, S. pimpinellifolium RIL-1670
S1083RIL-168fruit, red ripe, S. pimpinellifolium RIL-1680.05
S1084RIL-169fruit, red ripe, S. pimpinellifolium RIL-1690
S1085RIL-171fruit, red ripe, S. pimpinellifolium RIL-1710
S1086RIL-172fruit, red ripe, S. pimpinellifolium RIL-1720.17